Andreas Wilke
Title
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Year
The RAST Server: rapid annotations using subsystems technology
RK Aziz, D Bartels, AA Best, M DeJongh, T Disz, RA Edwards, K Formsma, ...
BMC genomics 9 (1), 1-15, 2008
77962008
The metagenomics RAST server–a public resource for the automatic phylogenetic and functional analysis of metagenomes
F Meyer, D Paarmann, M D'Souza, R Olson, EM Glass, M Kubal, ...
BMC bioinformatics 9 (1), 1-8, 2008
30852008
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ...
Gigascience 1 (1), 2047-217X-1-7, 2012
4792012
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ...
Nature biotechnology 29 (5), 415-420, 2011
4552011
Using the metagenomics RAST server (MG-RAST) for analyzing shotgun metagenomes
EM Glass, J Wilkening, A Wilke, D Antonopoulos, F Meyer
Cold Spring Harbor Protocols 2010 (1), pdb. prot5368, 2010
2802010
The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools
A Wilke, T Harrison, J Wilkening, D Field, EM Glass, N Kyrpides, ...
BMC bioinformatics 13 (1), 141, 2012
2052012
Red death in Caenorhabditis elegans caused by Pseudomonas aeruginosa PAO1
A Zaborin, K Romanowski, S Gerdes, C Holbrook, F Lepine, J Long, ...
Proceedings of the National Academy of Sciences 106 (15), 6327-6332, 2009
1842009
Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG
S Mitra, P Rupek, DC Richter, T Urich, JA Gilbert, F Meyer, A Wilke, ...
BMC bioinformatics 12 (1), 1-8, 2011
1342011
The MG-RAST metagenomics database and portal in 2015
A Wilke, J Bischof, W Gerlach, E Glass, T Harrison, KP Keegan, T Paczian, ...
Nucleic acids research 44 (D1), D590-D594, 2016
1292016
Comprehensive analysis of the extracellular proteins from Xanthomonas campestris pv. campestris B100
SA Watt, A Wilke, T Patschkowski, K Niehaus
Proteomics 5 (1), 153-167, 2005
1022005
Skyport-container-based execution environment management for multi-cloud scientific workflows
W Gerlach, W Tang, K Keegan, T Harrison, A Wilke, J Bischof, M DSouza, ...
2014 5th International Workshop on Data-Intensive Computing in the Clouds, 25-32, 2014
872014
Using clouds for metagenomics: a case study
J Wilkening, A Wilke, N Desai, F Meyer
2009 IEEE International Conference on Cluster Computing and Workshops, 1-6, 2009
782009
A platform-independent method for detecting errors in metagenomic sequencing data: DRISEE
KP Keegan, WL Trimble, J Wilkening, A Wilke, T Harrison, M D'Souza, ...
PLoS Comput Biol 8 (6), e1002541, 2012
662012
A RESTful API for accessing microbial community data for MG-RAST
A Wilke, J Bischof, T Harrison, T Brettin, M D'Souza, W Gerlach, ...
PLoS Comput Biol 11 (1), e1004008, 2015
532015
The complete genome sequence for putative H2‐ and S‐oxidizer Candidatus Sulfuricurvum sp., assembled de novo from an aquifer‐derived metagenome
KM Handley, D Bartels, EJ O'Loughlin, KH Williams, WL Trimble, ...
Environmental microbiology 16 (11), 3443-3462, 2014
492014
Short-read reading-frame predictors are not created equal: sequence error causes loss of signal
WL Trimble, KP Keegan, M D’Souza, A Wilke, J Wilkening, J Gilbert, ...
BMC bioinformatics 13 (1), 183, 2012
452012
Bioinformatics support for high-throughput proteomics
A Wilke, C Rückert, D Bartels, M Dondrup, A Goesmann, AT Hüser, ...
Journal of Biotechnology 106 (2-3), 147-156, 2003
422003
MG-RAST version 4—lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis
F Meyer, S Bagchi, S Chaterji, W Gerlach, A Grama, T Harrison, T Paczian, ...
Briefings in bioinformatics 20 (4), 1151-1159, 2019
412019
Connecting genotype to phenotype in the era of high-throughput sequencing
CS Henry, R Overbeek, F Xia, AA Best, E Glass, J Gilbert, P Larsen, ...
Biochimica et Biophysica Acta (BBA)-General Subjects 1810 (10), 967-977, 2011
392011
Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology
A Goesmann, B Linke, O Rupp, L Krause, D Bartels, M Dondrup, ...
Journal of biotechnology 106 (2-3), 157-167, 2003
392003
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