Matthew Brian Couger
TitleCited byYear
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ...
Nature protocols 8 (8), 1494, 2013
32322013
Phylogenetic diversity and community structure of anaerobic gut fungi (phylum Neocallimastigomycota) in ruminant and non-ruminant herbivores
AS Liggenstoffer, NH Youssef, MB Couger, MS Elshahed
The ISME journal 4 (10), 1225, 2010
1572010
The genome of the anaerobic fungus Orpinomyces sp. strain C1A reveals the unique evolutionary history of a remarkable plant biomass degrader
NH Youssef, MB Couger, CG Struchtemeyer, AS Liggenstoffer, RA Prade, ...
Appl. Environ. Microbiol. 79 (15), 4620-4634, 2013
1172013
A tissue-mapped axolotl de novo transcriptome enables identification of limb regeneration factors
DM Bryant, K Johnson, T DiTommaso, T Tickle, MB Couger, ...
Cell reports 18 (3), 762-776, 2017
1082017
Fine-scale bacterial beta diversity within a complex ecosystem (Zodletone Spring, OK, USA): the role of the rare biosphere
NH Youssef, MB Couger, MS Elshahed
PLoS one 5 (8), e12414, 2010
582010
Assessing the global phylum level diversity within the bacterial domain: a review
NH Youssef, MB Couger, AL McCully, AEG Criado, MS Elshahed
Journal of advanced research 6 (3), 269-282, 2015
472015
Transcriptomic analysis of lignocellulosic biomass degradation by the anaerobic fungal isolate Orpinomyces sp. strain C1A
MB Couger, NH Youssef, CG Struchtemeyer, AS Liggenstoffer, ...
Biotechnology for biofuels 8 (1), 208, 2015
352015
Penicillium echinulatum secretome analysis reveals the fungi potential for degradation of lignocellulosic biomass
WDH Schneider, TA Gonçalves, CA Uchima, MB Couger, R Prade, ...
Biotechnology for biofuels 9 (1), 66, 2016
252016
Genome analysis of Staphylococcus agnetis, an agent of lameness in broiler chickens
AAK Al-Rubaye, MB Couger, S Ojha, JF Pummill, JA Koon II, ...
PloS one 10 (11), e0143336, 2015
162015
Isolation and characterization of Rhizobium sp. strain YS‐1r that degrades lignin in plant biomass
CA Jackson, MB Couger, M Prabhakaran, KD Ramachandriya, P Canaan, ...
Journal of applied microbiology 122 (4), 940-952, 2017
142017
Research resource: the dexamethasone transcriptome in hypothalamic embryonic neural stem cells
KA Frahm, ME Peffer, JY Zhang, S Luthra, AB Chakka, MB Couger, ...
Molecular Endocrinology 30 (1), 144-154, 2016
142016
Genome sequences of the lignin-degrading Pseudomonas sp. strain YS-1p and Rhizobium sp. strain YS-1r isolated from decaying wood
M Prabhakaran, MB Couger, CA Jackson, T Weirick, BZ Fathepure
Genome Announc. 3 (2), e00019-15, 2015
142015
Myceliophthora thermophila M77 utilizes hydrolytic and oxidative mechanisms to deconstruct biomass
HB Dos Santos, TMS Bezerra, JGC Pradella, P Delabona, D Lima, ...
AMB Express 6 (1), 103, 2016
102016
Thermal adaptation strategies of the extremophile bacterium Thermus filiformis based on multi-omics analysis
F Mandelli, MB Couger, DAA Paixão, CB Machado, CM Carnielli, ...
Extremophiles 21 (4), 775-788, 2017
82017
Enabling large‐scale next‐generation sequence assembly with Blacklight
M Brian Couger, L Pipes, F Squina, R Prade, A Siepel, R Palermo, ...
Concurrency and Computation: Practice and Experience 26 (13), 2157-2166, 2014
82014
Draft genome sequence of the environmental isolate Chryseobacterium sp. Hurlbut01
MB Couger, A Hurlbut, CL Murphy, C Budd, DP French, WD Hoff, ...
Genome Announc. 3 (5), e01071-15, 2015
72015
Survival of the anaerobic fungus Orpinomyces sp. strain C1A after prolonged air exposure
CG Struchtemeyer, A Ranganathan, MB Couger, AS Liggenstoffer, ...
Scientific reports 4, 6892, 2014
72014
Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates
RA Hanafy, MB Couger, K Baker, C Murphy, SD O'Kane, C Budd, ...
Genomics data 9, 148-153, 2016
62016
Draft genome sequence of the thermophile Thermus filiformis ATCC 43280, producer of carotenoid-(di) glucoside-branched fatty acid (di) esters and source of hyperthermostable …
F Mandelli, BO Ramires, MB Couger, DAA Paixão, CM Camilo, ...
Genome Announc. 3 (3), e00475-15, 2015
52015
Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential
NT Miller, D Fuller, MB Couger, M Bagazinski, P Boyne, RC Devor, ...
Genomics data 9, 154-159, 2016
42016
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Articles 1–20