| Quantitative sequencing using BID-seq uncovers abundant pseudouridines in mammalian mRNA at base resolution Q Dai, LS Zhang, HL Sun, K Pajdzik, L Yang, C Ye, CW Ju, S Liu, Y Wang, ... Nature biotechnology 41 (3), 344-354, 2023 | 83 | 2023 |
| Metabolomic analyses reveal new stage-specific features of COVID-19 H Jia, C Liu, D Li, Q Huang, D Liu, Y Zhang, C Ye, D Zhou, Y Wang, Y Tan, ... European Respiratory Journal 59 (2), 2022 | 75 | 2022 |
| Mapping single-cell-resolution cell phylogeny reveals cell population dynamics during organ development K Liu, S Deng, C Ye, Z Yao, J Wang, H Gong, L Liu, X He Nature Methods 18 (12), 1506-1514, 2021 | 24 | 2021 |
| m7G-quant-seq: Quantitative Detection of RNA Internal N7-Methylguanosine LS Zhang, CW Ju, C Liu, J Wei, Q Dai, L Chen, C Ye, C He ACS Chemical Biology 17 (12), 3306-3312, 2022 | 19 | 2022 |
| m6A-SAC-seq for quantitative whole transcriptome m6A profiling R Ge, C Ye, Y Peng, Q Dai, Y Zhao, S Liu, P Wang, L Hu, C He Nature protocols 18 (2), 626-657, 2023 | 16 | 2023 |
| RBFOX2 recognizes N6-methyladenosine to suppress transcription and block myeloid leukaemia differentiation X Dou, Y Xiao, C Shen, K Wang, T Wu, C Liu, Y Li, X Yu, J Liu, Q Dai, ... Nature cell biology 25 (9), 1359-1368, 2023 | 11 | 2023 |
| Defining endogenous barcoding sites for CRISPR/Cas9-based cell lineage tracing in zebrafish C Ye, Z Chen, Z Liu, F Wang, X He Journal of genetics and genomics 47 (2), 85-91, 2020 | 9 | 2020 |
| Assessing the influence of dietary history on gut microbiota B Yang, C Ye, B Yan, X He, K Xing Current microbiology 76, 237-247, 2019 | 8 | 2019 |
| Nm-Mut-seq: a base-resolution quantitative method for mapping transcriptome-wide 2′-O-methylation L Chen, LS Zhang, C Ye, H Zhou, B Liu, B Gao, Z Deng, C Zhao, C He, ... Cell Research 33 (9), 727-730, 2023 | 7 | 2023 |
| YTHDF2/m6A/NF‐κB axis controls anti‐tumor immunity by regulating intratumoral Tregs L Zhang, X Dou, Z Zheng, C Ye, TX Lu, HL Liang, L Wang, ... The EMBO Journal 42 (15), e113126, 2023 | 7 | 2023 |
| Light-induced LLPS of the CRY2/SPA1/FIO1 complex regulating mRNA methylation and chlorophyll homeostasis in Arabidopsis B Jiang, Z Zhong, L Gu, X Zhang, J Wei, C Ye, G Lin, G Qu, X Xiang, ... Nature Plants 9 (12), 2042-2058, 2023 | 6 | 2023 |
| Sequencing of N6-methyl-deoxyadenosine at single-base resolution across the mammalian genome X Feng, X Cui, LS Zhang, C Ye, P Wang, Y Zhong, T Wu, Z Zheng, C He Molecular Cell 84 (3), 596-610. e6, 2024 | 3 | 2024 |
| Ultrafast bisulfite sequencing detection of 5-methylcytosine in DNA and RNA Q Dai, C Ye, I Irkliyenko, Y Wang, HL Sun, Y Gao, Y Liu, A Beadell, ... Nature Biotechnology, 1-12, 2024 | 3 | 2024 |
| Chemical Proteomic Discovery of Isotype‐Selective Covalent Inhibitors of the RNA Methyltransferase NSUN2 Y Tao, JG Felber, Z Zou, E Njomen, JR Remsberg, D Ogasawara, C Ye, ... Angewandte Chemie International Edition 62 (51), e202311924, 2023 | 3 | 2023 |
| BID-seq for transcriptome-wide quantitative sequencing of mRNA pseudouridine at base resolution LS Zhang, C Ye, CW Ju, B Gao, X Feng, HL Sun, J Wei, F Yang, Q Dai, ... Nature Protocols 19 (2), 517-538, 2024 | 2 | 2024 |
| Profiling of RNA-binding protein binding sites by in situ reverse transcription-based sequencing Y Xiao, YM Chen, Z Zou, C Ye, X Dou, J Wu, C Liu, S Liu, H Yan, P Wang, ... Nature Methods, 1-12, 2024 | 2 | 2024 |
| Analysis of genome-wide 5-hydroxymethylation of blood samples stored in different anticoagulants: opportunities for the expansion of clinical resources for epigenetic research L Gao, Z Zhang, XL Cui, D West-Szymanski, C Ye, C He, W Zhang, ... Epigenetics 18 (1), 2271692, 2023 | 1 | 2023 |
| Enzyme-mediated alkynylation enables transcriptome-wide identification of pseudouridine modifications Y Wang, L Zhang, W Zhang, B Gao, C Ye, Q Dai, K Wang, M Luo, T Pan, ... bioRxiv, 2023.06. 18.545436, 2023 | 1 | 2023 |
| Lineage recording of zebrafish embryogenesis reveals historical and ongoing lineage commitments Z Chen, C Ye, Z Liu, S Deng, X He, J Xu bioRxiv, 2020.07. 15.203760, 2020 | 1 | 2020 |
| Small-molecule inhibition of the METTL3/METTL14 complex suppresses neuroblastoma tumor growth and promotes differentiation M Pomaville, M Chennakesavalu, P Wang, Z Jiang, HL Sun, P Ren, ... Cell Reports 43 (5), 2024 | | 2024 |
Chuan HeThe University of ChicagoVerified email at uchicago.edu
