Zhiping Weng

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Brian G. PierceAssistant Professor, Department of Cell Biology and Molecular Genetics, IBBR, University of MarylandVerified email at umd.edu
Phillip D. ZamoreGretchen Stone Cook Professor of Biomedical Sciences, University of Massachusetts Medical SchoolVerified email at umassmed.edu
Jie WangAssistant Professor of Oncology, Roswell Park Comprehensive Cancer CenterVerified email at roswellpark.org
Thom VrevenVisterra, Inc.Verified email at visterrainc.com
William Stafford NobleProfessor of Genome Sciences, University of WashingtonVerified email at uw.edu
Howook HwangSenior Scientist, Schrodinger & Computational Scientist, Columbia UniversityVerified email at columbia.edu
Martin FrithNational Institute of Advanced Industrial Science and Technology (AIST), University of TokyoVerified email at edu.k.u-tokyo.ac.jp
Xianjun Dong, PhDAssistant Professor, Harvard Medical School; Director of Genomics and Bioinformatics Hub, BWHVerified email at rics.bwh.harvard.edu
Schahram AkbarianIcahn School of Medicine at Mount SinaiVerified email at mssm.edu
Rong ChenDirector of Clinical Genome Informatics & Assistant Professor, Mount Sinai School of MedicineVerified email at mssm.edu
Julian MintserisHarvard Medical SchoolVerified email at hms.harvard.edu
Chengjian Charles Li, Ph.D.Fornax BiotechVerified email at fornaxbio.com
Ewan BirneyDirector, EMBL-EBIVerified email at ebi.ac.uk
SHIKUI TUDepartment of Computer Science and Engineering, Shanghai Jiao Tong UniversityVerified email at sjtu.edu.cn
Wen Xuethe RNA Therapeutics Institute at the University of Massachusetts Medical SchoolVerified email at umassmed.edu
Oliver RandoProfessor of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical SchoolVerified email at umassmed.edu
Michael SnyderStanford UniversityVerified email at stanford.edu
Ulla HansenProfessor, Department of Biology, Boston UniversityVerified email at bu.edu
Gregory CrawfordDuke UniversityVerified email at duke.edu
Peter HavertyStaff Bioinformatics Engineer, Zymergen Inc.Verified email at zymergen.com

Zhiping Weng

Director, Professor of Program in Bioinformatics and Integrative Biology, University of

Verified email at umassmed.edu - Homepage

Bioinformatics computational biology genomics epigenomics transcriptional regulation


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012	11953	2012
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project ENCODE Project Consortium nature 447 (7146), 799, 2007	5353	2007
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome ND Heintzman, RK Stuart, G Hon, Y Fu, CW Ching, RD Hawkins, ... Nature genetics 39 (3), 311-318, 2007	3175	2007
Assessing computational tools for the discovery of transcription factor binding sites M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ... Nature biotechnology 23 (1), 137-144, 2005	1514	2005
ZDOCK: an initial‐stage protein‐docking algorithm R Chen, L Li, Z Weng Proteins: Structure, Function, and Bioinformatics 52 (1), 80-87, 2003	1367	2003
A global map of p53 transcription-factor binding sites in the human genome CL Wei, Q Wu, VB Vega, KP Chiu, P Ng, T Zhang, A Shahab, HC Yong, ... Cell 124 (1), 207-219, 2006	1305	2006
High-resolution mapping and characterization of open chromatin across the genome AP Boyle, S Davis, HP Shulha, P Meltzer, EH Margulies, Z Weng, ... Cell 132 (2), 311-322, 2008	1290	2008
Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals BR Carone, L Fauquier, N Habib, JM Shea, CE Hart, R Li, C Bock, C Li, ... Cell 143 (7), 1084-1096, 2010	990	2010
ZDOCK server: interactive docking prediction of protein–protein complexes and symmetric multimers BG Pierce, K Wiehe, H Hwang, BH Kim, T Vreven, Z Weng Bioinformatics 30 (12), 1771-1773, 2014	911	2014
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors J Wang, J Zhuang, S Iyer, XY Lin, TW Whitfield, MC Greven, BG Pierce, ... Genome research 22 (9), 1798-1812, 2012	884	2012
The TREM2-APOE pathway drives the transcriptional phenotype of dysfunctional microglia in neurodegenerative diseases S Krasemann, C Madore, R Cialic, C Baufeld, N Calcagno, R El Fatimy, ... Immunity 47 (3), 566-581. e9, 2017	881	2017
Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells M Ghildiyal, H Seitz, MD Horwich, C Li, T Du, S Lee, J Xu, ELW Kittler, ... Science 320 (5879), 1077-1081, 2008	716	2008
Defining functional DNA elements in the human genome M Kellis, B Wold, MP Snyder, BE Bernstein, A Kundaje, GK Marinov, ... Proceedings of the National Academy of Sciences 111 (17), 6131-6138, 2014	663	2014
Therapeutic genome editing by combined viral and non-viral delivery of CRISPR system components in vivo H Yin, CQ Song, JR Dorkin, LJ Zhu, Y Li, Q Wu, A Park, J Yang, S Suresh, ... Nature biotechnology 34 (3), 328-333, 2016	628	2016
Unsupervised pattern discovery in human chromatin structure through genomic segmentation MM Hoffman, OJ Buske, J Wang, Z Weng, JA Bilmes, WS Noble Nature methods 9 (5), 473, 2012	576	2012
Global mapping of c-Myc binding sites and target gene networks in human B cells KI Zeller, XD Zhao, CWH Lee, KP Chiu, F Yao, JT Yustein, HS Ooi, ... Proceedings of the National Academy of Sciences 103 (47), 17834-17839, 2006	561	2006
Target RNA–directed trimming and tailing of small silencing RNAs SL Ameres, MD Horwich, JH Hung, J Xu, M Ghildiyal, Z Weng, PD Zamore Science 328 (5985), 1534-1539, 2010	540	2010
Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies C Li, VV Vagin, S Lee, J Xu, S Ma, H Xi, H Seitz, MD Horwich, M Syrzycka, ... Cell 137 (3), 509-521, 2009	512	2009
The landscape of histone modifications across 1% of the human genome in five human cell lines CM Koch, RM Andrews, P Flicek, SC Dillon, U Karaöz, GK Clelland, ... Genome research 17 (6), 691-707, 2007	485	2007
Detection of functional DNA motifs via statistical over‐representation MC Frith, Y Fu, L Yu, JF Chen, U Hansen, Z Weng Nucleic acids research 32 (4), 1372-1381, 2004	480	2004

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