Kazuharu Arakawa
Kazuharu Arakawa
Institute for Advanced Biosciences, Keio University
Verified email at sfc.keio.ac.jp - Homepage
TitleCited byYear
Multiple high-throughput analyses monitor the response of E. coli to perturbations
N Ishii, K Nakahigashi, T Baba, M Robert, T Soga, A Kanai, T Hirasawa, ...
Science 316 (5824), 593-597, 2007
6432007
Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein
T Hashimoto, DD Horikawa, Y Saito, H Kuwahara, H Kozuka-Hata, T Shin, ...
Nature communications 7, 12808, 2016
1092016
Pathway projector: web-based zoomable pathway browser using KEGG atlas and Google Maps API
N Kono, K Arakawa, R Ogawa, N Kido, K Oshita, K Ikegami, S Tamaki, ...
PloS one 4 (11), e7710, 2009
962009
Pathway projector: web-based zoomable pathway browser using KEGG atlas and Google Maps API
N Kono, K Arakawa, R Ogawa, N Kido, K Oshita, K Ikegami, S Tamaki, ...
PLoS one 4 (11), e7710, 2009
962009
KEGG-based pathway visualization tool for complex omics data
K Arakawa, N Kono, Y Yamada, H Mori, M Tomita
In silico biology 5 (4), 419-423, 2005
962005
G-language Genome Analysis Environment: a workbench for nucleotide sequence data mining
K Arakawa, K Mori, K Ikeda, T Matsuzaki, Y Kobayashi, M Tomita
Bioinformatics 19 (2), 305-306, 2003
912003
Performance comparison of second-and third-generation sequencers using a bacterial genome with two chromosomes
M Miyamoto, D Motooka, K Gotoh, T Imai, K Yoshitake, N Goto, T Iida, ...
BMC genomics 15 (1), 699, 2014
732014
GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes
K Arakawa, Y Yamada, K Shinoda, Y Nakayama, M Tomita
BMC bioinformatics 7 (1), 168, 2006
602006
Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus
Y Yoshida, G Koutsovoulos, DR Laetsch, L Stevens, S Kumar, ...
PLoS biology 15 (7), e2002266, 2017
542017
De novo assembly and comparative transcriptome analysis of Euglena gracilis in response to anaerobic conditions
Y Yoshida, T Tomiyama, T Maruta, M Tomita, T Ishikawa, K Arakawa
BMC genomics 17 (1), 182, 2016
502016
Comprehensive prediction of chromosome dimer resolution sites in bacterial genomes
N Kono, K Arakawa, M Tomita
BMC genomics 12 (1), 19, 2011
502011
In silico screening of archaeal tRNA-encoding genes having multiple introns with bulge-helix-bulge splicing motifs
J Sugahara, N Yachie, K Arakawa, M Tomita
Rna 13 (5), 671-681, 2007
492007
Two novel heat-soluble protein families abundantly expressed in an anhydrobiotic tardigrade
A Yamaguchi, S Tanaka, S Yamaguchi, H Kuwahara, C Takamura, ...
PLoS One 7 (8), e44209, 2012
472012
Genome Projector: zoomable genome map with multiple views
K Arakawa, S Tamaki, N Kono, N Kido, K Ikegami, R Ogawa, M Tomita
BMC bioinformatics 10 (1), 31, 2009
472009
Analysis of DNA repair and protection in the Tardigrade Ramazzottius varieornatus and Hypsibius dujardini after exposure to UVC radiation
DD Horikawa, J Cumbers, I Sakakibara, D Rogoff, S Leuko, R Harnoto, ...
PloS one 8 (6), e64793, 2013
452013
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains
T Katayama, MD Wilkinson, KF Aoki-Kinoshita, S Kawashima, ...
Journal of biomedical semantics 5 (1), 5, 2014
442014
Quantitative assay for TALEN activity at endogenous genomic loci
Y Hisano, S Ota, K Arakawa, M Muraki, N Kono, K Oshita, T Sakuma, ...
Biology open 2 (4), 363-367, 2013
402013
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows
T Katayama, K Arakawa, M Nakao, K Ono, KF Aoki-Kinoshita, ...
Journal of biomedical semantics 1 (1), 8, 2010
402010
The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies
T Katayama, MD Wilkinson, G Micklem, S Kawashima, A Yamaguchi, ...
Journal of biomedical semantics 4 (1), 6, 2013
362013
No evidence for extensive horizontal gene transfer from the draft genome of a tardigrade
K Arakawa
Proceedings of the National Academy of Sciences 113 (22), E3057-E3057, 2016
342016
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Articles 1–20