Jake Lin
Jake Lin
Institute for Molecular Medicine Finland
Verified email at helsinki.fi
Title
Cited by
Cited by
Year
Comprehensive molecular portraits of human breast tumours
Cancer Genome Atlas Network
Nature 490 (7418), 61, 2012
62612012
Comprehensive molecular characterization of human colon and rectal cancer
Cancer Genome Atlas Network
Nature 487 (7407), 330, 2012
41582012
The cancer genome atlas pan-cancer analysis project
JN Weinstein, EA Collisson, GB Mills, KRM Shaw, BA Ozenberger, ...
Nature genetics 45 (10), 1113, 2013
26322013
Systems genomics evaluation of the SH-SY5Y neuroblastoma cell line as a model for Parkinson’s disease
A Krishna, M Biryukov, C Trefois, PMA Antony, R Hussong, J Lin, ...
BMC genomics 15 (1), 1154, 2014
832014
Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage
EEL Muller, N Pinel, CC Laczny, MR Hoopmann, S Narayanasamy, ...
Nature communications 5 (1), 1-10, 2014
552014
Integrated analysis of transcript-level regulation of metabolism reveals disease-relevant nodes of the human metabolic network
M Galhardo, L Sinkkonen, P Berninger, J Lin, T Sauter, M Heinäniemi
Nucleic acids research 42 (3), 1474-1496, 2014
412014
Vipie: web pipeline for parallel characterization of viral populations from multiple NGS samples
J Lin, L Kramna, R Autio, H Hyöty, M Nykter, O Cinek
BMC genomics 18 (1), 378, 2017
172017
Imbalance of bacteriome profiles within the Finnish Diabetes Prediction and Prevention study: Parallel use of 16S profiling and virome sequencing in stool samples from children …
O Cinek, L Kramna, J Lin, S Oikarinen, K Kolarova, J Ilonen, O Simell, ...
Pediatric diabetes 18 (7), 588-598, 2017
172017
High-throughput tetrad analysis
CL Ludlow, AC Scott, GA Cromie, EW Jeffery, A Sirr, P May, J Lin, ...
Nature methods 10 (7), 671, 2013
172013
Quantitative analysis of colony morphology in yeast
P Ruusuvuori, J Lin, AC Scott, Z Tan, S Sorsa, A Kallio, M Nykter, ...
BioTechniques 56 (1), 18-27, 2014
152014
Nature-derived microbiota exposure as a novel immunomodulatory approach
N Nurminen, J Lin, M Grönroos, R Puhakka, L Kramna, HK Vari, H Viskari, ...
Future microbiology 13 (07), 737-744, 2018
122018
Hemap: An interactive online resource for characterizing molecular phenotypes across hematologic malignancies
P Pölönen, J Mehtonen, J Lin, T Liuksiala, S Häyrynen, S Teppo, ...
Cancer research 79 (10), 2466-2479, 2019
72019
Fastbreak: a tool for analysis and visualization of structural variations in genomic data
R Bressler, J Lin, A Eakin, T Robinson, R Kreisberg, H Rovira, ...
EURASIP Journal on Bioinformatics and Systems Biology 2012 (1), 15, 2012
62012
Data-driven characterization of molecular phenotypes across heterogeneous sample collections
J Mehtonen, P Pölönen, S Häyrynen, O Dufva, J Lin, T Liuksiala, ...
Nucleic acids research 47 (13), e76-e76, 2019
52019
EPEPT: a web service for enhanced P-value estimation in permutation tests
TA Knijnenburg, J Lin, H Rovira, J Boyle, I Shmulevich
BMC bioinformatics 12 (1), 411, 2011
52011
SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments
DB Burdick, CC Cavnor, J Handcock, S Killcoyne, J Lin, B Marzolf, ...
BMC bioinformatics 11 (1), 377, 2010
52010
POMO-Plotting Omics analysis results for Multiple Organisms
J Lin, R Kreisberg, A Kallio, AM Dudley, M Nykter, I Shmulevich, P May, ...
BMC genomics 14 (1), 918, 2013
42013
Metagenomics of the faecal virome indicate a cumulative effect of enterovirus and gluten amount on the risk of coeliac disease autoimmunity in genetically at risk children: the …
K Lindfors, J Lin, HS Lee, H Hyöty, M Nykter, K Kurppa, E Liu, S Koletzko, ...
Gut, 2019
32019
Changes in the lung bacteriome in relation to antipseudomonal therapy in children with cystic fibrosis
L Kramná, P Dřevínek, J Lin, M Kulich, O Cinek
Folia microbiologica 63 (2), 237-248, 2018
22018
Nature-derived microbial exposure as a novel strategy to modify immune modulation among urban dwellers
AT Sinkkonen, H Hyöty, J Rajaniemi, R Puhakka, M Grönroos, A Parajuli, ...
Journal of Biotechnology 280 (S12-S31), S17, 2018
22018
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Articles 1–20