Colin Dewey
Colin Dewey
Professor of Biostatistics and Medical Informatics, University of Wisconsin-Madison
Verified email at biostat.wisc.edu - Homepage
TitleCited byYear
Initial sequencing and comparative analysis of the mouse genome
Mouse Genome Sequencing Consortium
Nature 420 (6915), 520, 2002
66522002
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
B Li, CN Dewey
BMC bioinformatics 12 (1), 323, 2011
59892011
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
ENCODE Project Consortium
Nature 447 (7146), 799, 2007
48522007
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ...
Nature protocols 8 (8), 1494, 2013
32322013
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
International Chicken Genome Sequencing Consortium
Nature 432 (7018), 695, 2004
22132004
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
Rat Genome Sequencing Project Consortium
Nature 428 (6982), 493, 2004
20172004
RNA-Seq gene expression estimation with read mapping uncertainty
B Li, V Ruotti, RM Stewart, JA Thomson, CN Dewey
Bioinformatics 26 (4), 493-500, 2009
7232009
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
A Stark, MF Lin, P Kheradpour, JS Pedersen, L Parts, JW Carlson, ...
Nature 450 (7167), 219, 2007
6212007
Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans
DJ Begun, AK Holloway, K Stevens, LDW Hillier, YP Poh, MW Hahn, ...
PLoS biology 5 (11), e310, 2007
5972007
A genome-wide map of conserved microRNA targets in C. elegans
S Lall, D Grün, A Krek, K Chen, YL Wang, CN Dewey, P Sood, T Colombo, ...
Current biology 16 (5), 460-471, 2006
4772006
Fast statistical alignment
RK Bradley, A Roberts, M Smoot, S Juvekar, J Do, C Dewey, I Holmes, ...
PLoS computational biology 5 (5), e1000392, 2009
3272009
BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis
BR Larget, SK Kotha, CN Dewey, C Ané
Bioinformatics 26 (22), 2910-2911, 2010
3222010
Genomic variation in natural populations of Drosophila melanogaster
CH Langley, K Stevens, C Cardeno, YCG Lee, DR Schrider, JE Pool, ...
Genetics 192 (2), 533-598, 2012
2572012
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
EH Margulies, GM Cooper, G Asimenos, DJ Thomas, CN Dewey, A Siepel, ...
Genome research 17 (6), 760-774, 2007
2312007
Evaluation of de novo transcriptome assemblies from RNA-Seq data
B Li, N Fillmore, Y Bai, M Collins, JA Thomson, R Stewart, CN Dewey
Genome biology 15 (12), 553, 2014
1652014
Aligning multiple whole genomes with Mercator and MAVID
CN Dewey
Comparative genomics, 221-235, 2007
1042007
Gata2 cis-element is required for hematopoietic stem cell generation in the mammalian embryo
X Gao, KD Johnson, YI Chang, ME Boyer, CN Dewey, J Zhang, ...
Journal of Experimental Medicine 210 (13), 2833-2842, 2013
862013
Rbm20 regulates titin alternative splicing as a splicing repressor
S Li, W Guo, CN Dewey, ML Greaser
Nucleic acids research 41 (4), 2659-2672, 2013
832013
Comparative RNA-seq analysis in the unsequenced axolotl: the oncogene burst highlights early gene expression in the blastema
R Stewart, CA Rascon, S Tian, J Nie, C Barry, LF Chu, H Ardalani, ...
PLoS computational biology 9 (3), e1002936, 2013
812013
Fine-scale phylogenetic discordance across the house mouse genome
MA White, C Ané, CN Dewey, BR Larget, BA Payseur
PLoS Genetics 5 (11), e1000729, 2009
792009
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