Timothy Bailey
Timothy Bailey
Verified email at unr.edu - Homepage
Title
Cited by
Cited by
Year
MEME Suite: tools for motif discovery and searching
TL Bailey, M Boden, FA Buske, M Frith, CE Grant, L Clementi, J Ren, ...
Nucleic acids research 37 (suppl_2), W202-W208, 2009
51792009
Fitting a mixture model by expectation maximization to discover motifs in bipolymers
TL Bailey, C Elkan
Department of Computer Science and Engineering, University of California …, 1994
50461994
The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
Science 309 (5740), 1559-1563, 2005
34232005
MEME: discovering and analyzing DNA and protein sequence motifs
TL Bailey, N Williams, C Misleh, WW Li
Nucleic acids research 34 (suppl_2), W369-W373, 2006
20462006
FIMO: scanning for occurrences of a given motif
CE Grant, TL Bailey, WS Noble
Bioinformatics 27 (7), 1017-1018, 2011
19802011
Assessing computational tools for the discovery of transcription factor binding sites
M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ...
Nature biotechnology 23 (1), 137-144, 2005
14852005
Combining evidence using p-values: application to sequence homology searches.
TL Bailey, M Gribskov
Bioinformatics (Oxford, England) 14 (1), 48-54, 1998
12461998
Quantifying similarity between motifs
S Gupta, JA Stamatoyannopoulos, TL Bailey, WS Noble
Genome biology 8 (2), R24, 2007
12002007
MEME-ChIP: motif analysis of large DNA datasets
P Machanick, TL Bailey
Bioinformatics 27 (12), 1696-1697, 2011
10312011
Unsupervised learning of multiple motifs in biopolymers using expectation maximization
TL Bailey, C Elkan
Machine learning 21 (1-2), 51-80, 1995
8851995
The value of prior knowledge in discovering motifs with MEME.
TL Bailey, C Elkan
Ismb 3, 21-29, 1995
8251995
DREME: motif discovery in transcription factor ChIP-seq data
TL Bailey
Bioinformatics 27 (12), 1653-1659, 2011
7932011
The MEME suite
TL Bailey, J Johnson, CE Grant, WS Noble
Nucleic acids research 43 (W1), W39-W49, 2015
6702015
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
H Suzuki, ARR Forrest, E Van Nimwegen, CO Daub, PJ Balwierz, ...
Nature genetics 41 (5), 553, 2009
4262009
Defining the RGG/RG motif
P Thandapani, TR O’Connor, TL Bailey, S Richard
Molecular cell 50 (5), 613-623, 2013
3272013
Inferring direct DNA binding from ChIP-seq
TL Bailey, P Machanick
Nucleic acids research 40 (17), e128-e128, 2012
3062012
Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data
RC McLeay, TL Bailey
BMC bioinformatics 11 (1), 165, 2010
3052010
Discovering sequence motifs with arbitrary insertions and deletions
MC Frith, NFW Saunders, B Kobe, TL Bailey
PLoS Comput Biol 4 (5), e1000071, 2008
2882008
Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts
F Ay, TL Bailey, WS Noble
Genome research 24 (6), 999-1011, 2014
2772014
Practical guidelines for the comprehensive analysis of ChIP-seq data
T Bailey, P Krajewski, I Ladunga, C Lefebvre, Q Li, T Liu, P Madrigal, ...
PLoS Comput Biol 9 (11), e1003326, 2013
2692013
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