Timothy Bailey - Google Scholar

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Citations	32974	17398
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Co-authors

William Stafford NobleProfessor of Genome Sciences, University of WashingtonVerified email at uw.edu
Mikael BodenThe University of QueenslandVerified email at uq.edu.au
Charles ElkanProfessor of Computer Science, University of California, San DiegoVerified email at ucsd.edu
Charles E. GrantUniversity of WashingtonVerified email at uw.edu
Martin FrithNational Institute of Advanced Industrial Science and Technology (AIST), University of TokyoVerified email at edu.k.u-tokyo.ac.jp
Fabian A. BuskeGarvan Institute of Medical ResearchVerified email at garvan.org.au
Michael GribskovPurdue UniversityVerified email at purdue.edu
Philip MachanickDepartment of Computer Science, Rhodes University, South Africa – https://orcid.org/0000-0001-6648Verified email at ru.ac.za
Andrew PerkinsProfessor of Cancer GenomicsVerified email at monash.edu
Denis C. BauerCSIRO eHealth - Biomedical Informatics Group - Transformational Bioinformatics TeamVerified email at csiro.au
Graziano PesoleProfessor of Molecular Biology, Università degli Studi di Bari and National Research CouncilVerified email at uniba.it
Richard GronostajskiUniversity At BuffaloVerified email at buffalo.edu
Michael E. BakerResearch Professor, University of California, San DiegoVerified email at ucsd.edu
George ChurchHarvard Medical SchoolVerified email at harvard.edu
Eleazar EskinUniversity of California, Los AngelesVerified email at cs.ucla.edu
Giulio PavesiAssociate Professor of Computer Science (Bioinformatics), University of Milano, ItalyVerified email at unimi.it
De Moor BartKU Leuven ESAT-StadiusVerified email at esat.kuleuven.be
Prof. Sean M. GrimmondThe University of Melbourne Centre for Cancer ResearchVerified email at unimelb.edu.au
Carninci PieroRIKEN, Center for Integrative Medical Sciences (IMS)Verified email at postman.riken.jp
Wilfred W. LiUniversity of California, San DiegoVerified email at ucsd.edu

Timothy Bailey

University of Nevada, Reno

Verified email at unr.edu - Homepage

Bioinformatics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
MEME Suite: tools for motif discovery and searching TL Bailey, M Boden, FA Buske, M Frith, CE Grant, L Clementi, J Ren, ... Nucleic acids research 37 (suppl_2), W202-W208, 2009	5179	2009
Fitting a mixture model by expectation maximization to discover motifs in bipolymers TL Bailey, C Elkan Department of Computer Science and Engineering, University of California …, 1994	5046	1994
The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... Science 309 (5740), 1559-1563, 2005	3423	2005
MEME: discovering and analyzing DNA and protein sequence motifs TL Bailey, N Williams, C Misleh, WW Li Nucleic acids research 34 (suppl_2), W369-W373, 2006	2046	2006
FIMO: scanning for occurrences of a given motif CE Grant, TL Bailey, WS Noble Bioinformatics 27 (7), 1017-1018, 2011	1980	2011
Assessing computational tools for the discovery of transcription factor binding sites M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ... Nature biotechnology 23 (1), 137-144, 2005	1485	2005
Combining evidence using p-values: application to sequence homology searches. TL Bailey, M Gribskov Bioinformatics (Oxford, England) 14 (1), 48-54, 1998	1246	1998
Quantifying similarity between motifs S Gupta, JA Stamatoyannopoulos, TL Bailey, WS Noble Genome biology 8 (2), R24, 2007	1200	2007
MEME-ChIP: motif analysis of large DNA datasets P Machanick, TL Bailey Bioinformatics 27 (12), 1696-1697, 2011	1031	2011
Unsupervised learning of multiple motifs in biopolymers using expectation maximization TL Bailey, C Elkan Machine learning 21 (1-2), 51-80, 1995	885	1995
The value of prior knowledge in discovering motifs with MEME. TL Bailey, C Elkan Ismb 3, 21-29, 1995	825	1995
DREME: motif discovery in transcription factor ChIP-seq data TL Bailey Bioinformatics 27 (12), 1653-1659, 2011	793	2011
The MEME suite TL Bailey, J Johnson, CE Grant, WS Noble Nucleic acids research 43 (W1), W39-W49, 2015	670	2015
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line H Suzuki, ARR Forrest, E Van Nimwegen, CO Daub, PJ Balwierz, ... Nature genetics 41 (5), 553, 2009	426	2009
Defining the RGG/RG motif P Thandapani, TR O’Connor, TL Bailey, S Richard Molecular cell 50 (5), 613-623, 2013	327	2013
Inferring direct DNA binding from ChIP-seq TL Bailey, P Machanick Nucleic acids research 40 (17), e128-e128, 2012	306	2012
Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data RC McLeay, TL Bailey BMC bioinformatics 11 (1), 165, 2010	305	2010
Discovering sequence motifs with arbitrary insertions and deletions MC Frith, NFW Saunders, B Kobe, TL Bailey PLoS Comput Biol 4 (5), e1000071, 2008	288	2008
Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts F Ay, TL Bailey, WS Noble Genome research 24 (6), 999-1011, 2014	277	2014
Practical guidelines for the comprehensive analysis of ChIP-seq data T Bailey, P Krajewski, I Ladunga, C Lefebvre, Q Li, T Liu, P Madrigal, ... PLoS Comput Biol 9 (11), e1003326, 2013	269	2013

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