Joaquin Dopazo
Joaquin Dopazo
Head of the Clinical Bioinformatics Area, FPS, Hospital Virgen del Rocio, Sevilla, Spain
Verified email at juntadeandalucia.es - Homepage
Title
Cited by
Cited by
Year
High-throughput functional annotation and data mining with the Blast2GO suite
S Götz, JM García-Gómez, J Terol, TD Williams, SH Nagaraj, MJ Nueda, ...
Nucleic acids research 36 (10), 3420-3435, 2008
31502008
Differential expression in RNA-seq: a matter of depth
S Tarazona, F García-Alcalde, J Dopazo, A Ferrer, A Conesa
Genome research 21 (12), 2213-2223, 2011
13462011
FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes
F Al-Shahrour, R Díaz-Uriarte, J Dopazo
Bioinformatics 20 (4), 578-580, 2004
13062004
A hierarchical unsupervised growing neural network for clustering gene expression patterns
J Herrero, A Valencia, J Dopazo
Bioinformatics 17 (2), 126, 2001
7642001
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
SEQC Consortium
Nature biotechnology 32 (9), 903, 2014
6322014
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.
L Shi, G Campbell, WD Jones, F Campagne, Z Wen, SJ Walker, Z Su, ...
Nature biotechnology 28 (8), 827-838, 2010
6302010
Changes in the pattern of DNA methylation associate with twin discordance in systemic lupus erythematosus
BM Javierre, AF Fernandez, J Richter, F Al-Shahrour, JI Martin-Subero, ...
Genome research 20 (2), 170-179, 2010
6082010
Qualimap: evaluating next-generation sequencing alignment data
F García-Alcalde, K Okonechnikov, J Carbonell, LM Cruz, S Götz, ...
Bioinformatics 28 (20), 2678-2679, 2012
5952012
ETE: a python Environment for Tree Exploration
J Huerta-Cepas, J Dopazo, T Gabaldón
BMC bioinformatics 11 (1), 1-7, 2010
4002010
Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling
I Medina, J Carbonell, L Pulido, SC Madeira, S Goetz, A Conesa, ...
Nucleic acids research 38 (suppl_2), W210-W213, 2010
3582010
Initial genomics of the human nucleolus
A Németh, A Conesa, J Santoyo-Lopez, I Medina, D Montaner, B Péterfia, ...
PLoS genetics 6 (3), e1000889, 2010
3492010
Differential lipid partitioning between adipocytes and tissue macrophages modulates macrophage lipotoxicity and M2/M1 polarization in obese mice
X Prieur, CYL Mok, VR Velagapudi, V Núñez, L Fuentes, D Montaner, ...
Diabetes 60 (3), 797-809, 2011
3422011
BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments
F Al-Shahrour, P Minguez, J Tárraga, D Montaner, E Alloza, ...
Nucleic acids research 34 (suppl_2), W472-W476, 2006
3212006
Genomics of the origin and evolution of Citrus
GA Wu, J Terol, V Ibanez, A López-García, E Pérez-Román, C Borredá, ...
Nature 554 (7692), 311-316, 2018
3102018
FatiGO+: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments
F Al-Shahrour, P Minguez, J Tárraga, I Medina, E Alloza, D Montaner, ...
Nucleic acids research 35 (suppl_2), W91-W96, 2007
3062007
BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments
F Al-Shahrour, P Minguez, JM Vaquerizas, L Conde, J Dopazo
Nucleic acids research 33 (suppl_2), W460-W464, 2005
3012005
Phylogenetic reconstruction using an unsupervised growing neural network that adopts the topology of a phylogenetic tree
J Dopazo, JM Carazo
Journal of molecular evolution 44 (2), 226-233, 1997
2571997
PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes
L Conde, JM Vaquerizas, H Dopazo, L Arbiza, J Reumers, F Rousseau, ...
Nucleic acids research 34 (suppl_2), W621-W625, 2006
2562006
Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection
AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ...
Nature methods 12 (7), 623-630, 2015
2382015
GEPAS: a web-based resource for microarray gene expression data analysis
J Herrero, F Al-Shahrour, R Diaz-Uriarte, A Mateos, JM Vaquerizas, ...
Nucleic acids research 31 (13), 3461-3467, 2003
2312003
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