| VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis MI Cornwell, M Vangala, L Taing, Z Herbert, J Köster, B Li, H Sun, T Li, ... BMC bioinformatics 19, 1-14, 2018 | 169 | 2018 |
| Analysis of PD1, PDL1, PDL2 expression and T cells infiltration in 1014 gastric cancer patients X Xing, J Guo, G Ding, B Li, B Dong, Q Feng, S Li, J Zhang, X Ying, ... Oncoimmunology 7 (3), e1356144, 2018 | 133 | 2018 |
| Landscape of B cell immunity and related immune evasion in human cancers X Hu, J Zhang, J Wang, J Fu, T Li, X Zheng, B Wang, S Gu, P Jiang, J Fan, ... Nature genetics 51 (3), 560-567, 2019 | 128 | 2019 |
| Investigation of Antigen-Specific T-Cell Receptor Clusters in Human Cancers H Zhang, L Liu, J Zhang, J Chen, J Ye, S Shukla, J Qiao, X Zhan, H Chen, ... Clinical Cancer Research 26 (6), 1359-1371, 2020 | 98 | 2020 |
| Ultrasensitive detection of TCR hypervariable-region sequences in solid-tissue RNA–seq data B Li, T Li, B Wang, R Dou, J Zhang, JS Liu, XS Liu Nature genetics 49 (4), 482-483, 2017 | 76 | 2017 |
| Gut metagenomes of type 2 diabetic patients have characteristic single-nucleotide polymorphism distribution in Bacteroides coprocola Y Chen, Z Li, S Hu, J Zhang, J Wu, N Shao, X Bo, M Ni, X Ying Microbiome 5, 1-7, 2017 | 50 | 2017 |
| Immune receptor repertoires in pediatric and adult acute myeloid leukemia J Zhang, X Hu, J Wang, AD Sahu, D Cohen, L Song, Z Ouyang, J Fan, ... Genome medicine 11, 1-11, 2019 | 46 | 2019 |
| A tumor-specific prognostic long non-coding RNA signature in gastric cancer W Ren, J Zhang, W Li, Z Li, S Hu, J Suo, X Ying Medical science monitor: international medical journal of experimental and …, 2016 | 41 | 2016 |
| Effect of neoadjuvant chemotherapy on the immune microenvironment in gastric cancer as determined by multiplex immunofluorescence and T cell receptor repertoire analysis X Xing, J Shi, Y Jia, Y Dou, Z Li, B Dong, T Guo, X Cheng, X Li, H Du, ... Journal for immunotherapy of cancer 10 (3), 2022 | 39 | 2022 |
| SUMOylated NKAP is essential for chromosome alignment by anchoring CENP-E to kinetochores T Li, L Chen, J Cheng, J Dai, Y Huang, J Zhang, Z Liu, A Li, N Li, H Wang, ... Nature communications 7 (1), 12969, 2016 | 36 | 2016 |
| Transcriptional response profiles of paired tumor-normal samples offer novel perspectives in pan-cancer analysis S Hu, H Yuan, Z Li, J Zhang, J Wu, Y Chen, Q Shi, W Ren, N Shao, X Ying Oncotarget 8 (25), 41334, 2017 | 29 | 2017 |
| Up-regulation of FAM64A promotes epithelial-to-mesenchymal transition and enhances stemness features in breast cancer cells J Zhang, L Qian, J Wu, D Lu, H Yuan, W Li, X Ying, S Hu Biochemical and biophysical research communications 513 (2), 472-478, 2019 | 22 | 2019 |
| BCIP: a gene-centered platform for identifying potential regulatory genes in breast cancer J Wu, S Hu, Y Chen, Z Li, J Zhang, H Yuan, Q Shi, N Shao, X Ying Scientific reports 7 (1), 45235, 2017 | 22 | 2017 |
| Integrative single-cell transcriptome analysis reveals a subpopulation of fibroblasts associated with favorable prognosis of liver cancer patients H Wang, C Feng, M Lu, B Zhang, Y Xu, Q Zeng, J Xi, J Zhou, X Ying, ... Translational Oncology 14 (1), 100981, 2021 | 15 | 2021 |
| Transcriptome alterations in liver metastases of colorectal cancer after acquired resistance to cetuximab Z Li, Y Chen, WU Ren, S Hu, Z Tan, Y Wang, Y Chen, J Zhang, J Wu, T Li, ... Cancer genomics & proteomics 16 (3), 207-219, 2019 | 14 | 2019 |
| Integrative analysis of protein-coding and non-coding RNAs identifies clinically relevant subtypes of clear cell renal cell carcinoma Z Li, Y Chen, S Hu, J Zhang, J Wu, W Ren, N Shao, X Ying Oncotarget 7 (50), 82671, 2016 | 13 | 2016 |
| Direct chemical reprogramming of human cord blood erythroblasts to induced megakaryocytes that produce platelets J Qin, J Zhang, J Jiang, B Zhang, J Li, X Lin, S Wang, M Zhu, Z Fan, Y Lv, ... Cell stem cell 29 (8), 1229-1245. e7, 2022 | 10 | 2022 |
| Evaluation of immune repertoire inference methods from RNA-seq data X Hu, J Zhang, JS Liu, B Li, XS Liu Nature biotechnology 36 (11), 1034-1034, 2018 | 8 | 2018 |
| Loss of H3K36 methyltransferase SETD2 impairs V (D) J recombination during lymphoid development SH Chu, JR Chabon, CN Matovina, JC Minehart, BR Chen, J Zhang, ... Iscience 23 (3), 2020 | 6 | 2020 |
| Tertiary lymphoid structure and decreased CD8+ T cell infiltration in minimally invasive adenocarcinoma J Wang, D Jiang, X Zheng, W Li, T Zhao, D Wang, H Yu, D Sun, Z Li, ... Iscience 25 (3), 2022 | 5 | 2022 |
Xiaomin YingCenter for Computational Biology, Beijing Institute of Basic Medical SciencesVerified email at bmi.ac.cn
