Chaochun Wei

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Zhiqiang HuUniversity of California, BerkeleyVerified email at berkeley.edu
Yixue LiSIBS, CASVerified email at sibs.ac.cn
guangyong zhengShanghai Institutes for Biological Sciences, Chinese Academy of SciencesVerified email at picb.ac.cn
Chen SunUniversity of MichiganVerified email at umich.edu
Zhi-Kang Li or Zhikang LiInstitute of Crop Sciences, Chinese Academy of Agricultural SciencesVerified email at caas.cn
Kang TuAppleVerified email at apple.com
Michael BrentWashington UniversityVerified email at wustl.edu
Jian-Long XuProfessor of Institute of Crop Sciences, Chinese Academy of Agricultural SciencesVerified email at caas.cn
Youfang CaoEisai IncVerified email at eisai.com
Liping ZhaoShanghai Jiao Tong UniversityVerified email at sjtu.edu.cn
Zheng Tian-QingInstitute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic ImprovementVerified email at caas.cn
Dabing ZhangThe University of Adelaide and Shanghai Jiao Tong UniversityVerified email at adelaide.edu.au
David L AdelsonProfessor of Bioinformatics, The University of AdelaideVerified email at adelaide.edu.au
Binying Fu中国农业科学院作物科学研究所Verified email at caas.cn
Yue ZhaoPhD, Boston University | Applied Scientist @ AmazonVerified email at amazon.com
Manimozhiyan ArumugamAssociate Professor, Faculty of Health and Medical Sciences, University of CopenhagenVerified email at sund.ku.dk
Hahn CNGenetics and Molecular Biology, AdelaideVerified email at sa.gov.au
Hamish S ScottCenter of Cancer BiologyVerified email at sa.gov.au
Tao HuangShanghai Institute of Nutrition and Health, Chinese Academy of SciencesVerified email at sibs.ac.cn
Yu ShyrDirector, Vanderbilt Center for Quantitative SciencesVerified email at vanderbilt.edu

Chaochun Wei

Shanghai Jiao Tong University

Verified email at sjtu.edu.cn - Homepage

Bioinformatics


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Interactions between gut microbiota, host genetics and diet relevant to development of metabolic syndromes in mice C Zhang, M Zhang, S Wang, R Han, Y Cao, W Hua, Y Mao, X Zhang, ... The ISME journal 4 (2), 232-241, 2010	1171	2010
Genomic variation in 3,010 diverse accessions of Asian cultivated rice W Wang, R Mauleon, Z Hu, D Chebotarov, S Tai, Z Wu, M Li, T Zheng, ... Nature 557 (7703), 43-49, 2018	1167	2018
The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics LD Stein, Z Bao, D Blasiar, T Blumenthal, MR Brent, N Chen, A Chinwalla, ... PLoS biology 1 (2), e45, 2003	1111	2003
Analysis of oral microbiota in children with dental caries by PCR-DGGE and barcoded pyrosequencing Z Ling, J Kong, P Jia, C Wei, Y Wang, Z Pan, W Huang, L Li, H Chen, ... Microbial ecology 60, 677-690, 2010	312	2010
Whole-genome sequencing of six dog breeds from continuous altitudes reveals adaptation to high-altitude hypoxia X Gou, Z Wang, N Li, F Qiu, ZE Xu, D Yan, S Yang, J Jia, X Kong, Z Wei, ... Genome research 24 (8), 1308-1315, 2014	217	2014
More than 9,000,000 unique genes in human gut bacterial community: estimating gene numbers inside a human body X Yang, L Xie, Y Li, C Wei PloS one 4 (6), e6074, 2009	197	2009
RPAN: rice pan-genome browser for∼ 3000 rice genomes C Sun, Z Hu, T Zheng, K Lu, Y Zhao, W Wang, J Shi, C Wang, J Lu, ... Nucleic acids research 45 (2), 597-605, 2017	160	2017
The completion of the mammalian gene collection (MGC) G Temple, DS Gerhard, R Rasooly, EA Feingold, PJ Good, C Robinson, ... Genome research 19 (12), 2324-2333, 2009	158	2009
ITFP: an integrated platform of mammalian transcription factors G Zheng, K Tu, Q Yang, Y Xiong, C Wei, L Xie, Y Zhu, Y Li Bioinformatics 24 (20), 2416-2417, 2008	158	2008
LAceP: lysine acetylation site prediction using logistic regression classifiers T Hou, G Zheng, P Zhang, J Jia, J Li, L Xie, C Wei, Y Li PloS one 9 (2), e89575, 2014	102	2014
Towards a deeper haplotype mining of complex traits in rice with RFGB v2. 0 W Chun-Chao, H Yu, J Huang, WS Wang, M Faruquee, F Zhang, XQ Zhao, ... Plant biotechnology journal 18 (1), 14, 2019	92	2019
NeSSM: a next-generation sequencing simulator for metagenomics B Jia, L Xuan, K Cai, Z Hu, L Ma, C Wei PloS one 8 (10), e75448, 2013	74	2013
HUPAN: a pan-genome analysis pipeline for human genomes Z Duan, Y Qiao, J Lu, H Lu, W Zhang, F Yan, C Sun, Z Hu, Z Zhang, G Li, ... Genome biology 20, 1-11, 2019	69	2019
Using ESTs to improve the accuracy of de novo gene prediction C Wei, MR Brent BMC bioinformatics 7, 1-10, 2006	65	2006
Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions C Wei, P Lamesch, M Arumugam, J Rosenberg, P Hu, M Vidal, MR Brent Genome research 15 (4), 577-582, 2005	58	2005
The prediction of interferon treatment effects based on time series microarray gene expression profiles T Huang, K Tu, Y Shyr, CC Wei, L Xie, YX Li Journal of Translational Medicine 6, 1-9, 2008	54	2008
Revealing Missing Human Protein Isoforms Based on Ab Initio Prediction, RNA-seq and Proteomics Z Hu, HS Scott, G Qin, G Zheng, X Chu, L Xie, DL Adelson, BE Oftedal, ... Scientific reports 5 (1), 10940, 2015	52	2015
EUPAN enables pan-genome studies of a large number of eukaryotic genomes Z Hu, C Sun, K Lu, X Chu, Y Zhao, J Lu, J Shi, C Wei Bioinformatics 33 (15), 2408-2409, 2017	50	2017
RNA virus receptor Rig-I monitors gut microbiota and inhibits colitis-associated colorectal cancer H Zhu, WY Xu, Z Hu, H Zhang, Y Shen, S Lu, C Wei, ZG Wang Journal of Experimental & Clinical Cancer Research 36, 1-11, 2017	48	2017
Long-read sequencing of 111 rice genomes reveals significantly larger pan-genomes F Zhang, H Xue, X Dong, M Li, X Zheng, Z Li, J Xu, W Wang, C Wei Genome Research 32 (5), 853-863, 2022	46	2022

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