Isidore Rigoutsos
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A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes
KC Miranda, T Huynh, Y Tay, YS Ang, WL Tam, AM Thomson, B Lim, ...
Cell 126 (6), 1203-1217, 2006
The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins
P Dehal, Y Satou, RK Campbell, J Chapman, B Degnan, A De Tomaso, ...
Science 298 (5601), 2157-2167, 2002
MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation
Y Tay, J Zhang, AM Thomson, B Lim, I Rigoutsos
Nature 455 (7216), 1124-1128, 2008
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
F Warnecke, P Luginbühl, N Ivanova, M Ghassemian, TH Richardson, ...
Nature 450 (7169), 560-565, 2007
Dynamic changes in the human methylome during differentiation
L Laurent, E Wong, G Li, T Huynh, A Tsirigos, CT Ong, HM Low, ...
Genome research 20 (3), 320-331, 2010
Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs
Y Tay, L Kats, L Salmena, D Weiss, SM Tan, U Ala, F Karreth, L Poliseno, ...
Cell 147 (2), 344-357, 2011
The expression of microRNA miR-107 decreases early in Alzheimer's disease and may accelerate disease progression through regulation of β-site amyloid precursor protein-cleaving …
WX Wang, BW Rajeev, AJ Stromberg, N Ren, G Tang, Q Huang, ...
Journal of Neuroscience 28 (5), 1213-1223, 2008
Geometric hashing: An overview
HJ Wolfson, I Rigoutsos
IEEE computational science and engineering 4 (4), 10-21, 1997
Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm.
I Rigoutsos, A Floratos
Bioinformatics (Oxford, England) 14 (1), 55-67, 1998
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities
HG Martin, N Ivanova, V Kunin, F Warnecke, KW Barry, AC McHardy, ...
Nature biotechnology 24 (10), 1263-1269, 2006
The miR-17/92 cluster: a comprehensive update on its genomics, genetics, functions and increasingly important and numerous roles in health and disease
E Mogilyansky, I Rigoutsos
Cell Death & Differentiation 20 (12), 1603-1614, 2013
Accurate phylogenetic classification of variable-length DNA fragments
AC McHardy, HG Martín, A Tsirigos, P Hugenholtz, I Rigoutsos
Nature methods 4 (1), 63-72, 2007
The amphioxus genome illuminates vertebrate origins and cephalochordate biology
LZ Holland, R Albalat, K Azumi, È Benito-Gutiérrez, MJ Blow, ...
Genome research 18 (7), 1100-1111, 2008
Integrated genomic characterization of pancreatic ductal adenocarcinoma
BJ Raphael, RH Hruban, AJ Aguirre, RA Moffitt, JJ Yeh, C Stewart, ...
Cancer cell 32 (2), 185-203. e13, 2017
An algorithm for point clustering and grid generation
M Berger, I Rigoutsos
IEEE Transactions on Systems, Man, and Cybernetics 21 (5), 1278-1286, 1991
Analysis of 13 cell types reveals evidence for the expression of numerous novel primate-and tissue-specific microRNAs
E Londin, P Loher, AG Telonis, K Quann, P Clark, Y Jing, E Hatzimichael, ...
Proceedings of the National Academy of Sciences 112 (10), E1106-E1115, 2015
Use of simulated data sets to evaluate the fidelity of metagenomic processing methods
K Mavromatis, N Ivanova, K Barry, H Shapiro, E Goltsman, AC McHardy, ...
Nature methods 4 (6), 495-500, 2007
Genomic analysis of immunity in a Urochordate and the emergence of the vertebrate immune system:“waiting for Godot”
K Azumi, R De Santis, A De Tomaso, I Rigoutsos, F Yoshizaki, MR Pinto, ...
Immunogenetics 55 (8), 570-581, 2003
FLASH: A fast look-up algorithm for string homology
A Califano, I Rigoutsos
Proceedings of IEEE Conference on Computer Vision and Pattern Recognition …, 1993
MicroRNA‐134 modulates the differentiation of mouse embryonic stem cells, where it causes post‐transcriptional attenuation of Nanog and LRH1
YMS Tay, WL Tam, YS Ang, PM Gaughwin, H Yang, W Wang, R Liu, ...
Stem cells 26 (1), 17-29, 2008
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