|New world bats harbor diverse influenza A viruses|
S Tong, X Zhu, Y Li, M Shi, J Zhang, M Bourgeois, H Yang, X Chen, ...
PLoS pathog 9 (10), e1003657, 2013
|A distinct lineage of influenza A virus from bats|
S Tong, Y Li, P Rivailler, C Conrardy, DAA Castillo, LM Chen, ...
Proceedings of the National Academy of Sciences 109 (11), 4269-4274, 2012
|Redefining the invertebrate RNA virosphere|
M Shi, XD Lin, JH Tian, LJ Chen, X Chen, CX Li, XC Qin, J Li, JP Cao, ...
Nature 540 (7634), 539-543, 2016
|Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses|
CX Li, M Shi, JH Tian, XD Lin, YJ Kang, LJ Chen, XC Qin, J Xu, ...
elife 4, e05378, 2015
|Taxonomy of the order Mononegavirales: update 2016|
CL Afonso, GK Amarasinghe, K Bányai, Y Bŕo, CF Basler, S Bavari, ...
Archives of virology 161 (8), 2351-2360, 2016
|The evolutionary history of vertebrate RNA viruses|
M Shi, XD Lin, X Chen, JH Tian, LJ Chen, K Li, W Wang, JS Eden, ...
Nature 556 (7700), 197-202, 2018
|Molecular epidemiology of PRRSV: a phylogenetic perspective|
M Shi, TTY Lam, CC Hon, RKH Hui, KS Faaberg, T Wennblom, ...
Virus research 154 (1-2), 7-17, 2010
|Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients|
Y Xiong, Y Liu, L Cao, D Wang, M Guo, A Jiang, D Guo, W Hu, J Yang, ...
Emerging microbes & infections 9 (1), 761-770, 2020
|Phylogeny-based evolutionary, demographical, and geographical dissection of North American type 2 porcine reproductive and respiratory syndrome viruses|
M Shi, TTY Lam, CC Hon, MP Murtaugh, PR Davies, RKH Hui, J Li, ...
Journal of virology 84 (17), 8700-8711, 2010
|RNA based mNGS approach identifies a novel human coronavirus from two individual pneumonia cases in 2019 Wuhan outbreak|
L Chen, W Liu, Q Zhang, K Xu, G Ye, W Wu, Z Sun, F Liu, K Wu, B Zhong, ...
Emerging microbes & infections 9 (1), 313-319, 2020
|Divergent viruses discovered in arthropods and vertebrates revise the evolutionary history of the Flaviviridae and related viruses|
M Shi, XD Lin, N Vasilakis, JH Tian, CX Li, LJ Chen, G Eastwood, ...
Journal of virology 90 (2), 659-669, 2016
|Molecular inferences suggest multiple host shifts of rabies viruses from bats to mesocarnivores in Arizona during 2001–2009|
IV Kuzmin, M Shi, LA Orciari, PA Yager, A Velasco-Villa, NA Kuzmina, ...
PLoS Pathog 8 (6), e1002786, 2012
|Importation and recombination are responsible for the latest emergence of highly pathogenic porcine reproductive and respiratory syndrome virus in China|
K Zhao, C Ye, XB Chang, CG Jiang, SJ Wang, XH Cai, GZ Tong, ZJ Tian, ...
Journal of virology 89 (20), 10712-10716, 2015
|Second-Pandemic Strain of Vibrio cholerae from the Philadelphia Cholera Outbreak of 1849|
AM Devault, GB Golding, N Waglechner, JM Enk, M Kuch, JH Tien, M Shi, ...
New England Journal of Medicine 370 (4), 334-340, 2014
|Evolutionary conservation of the PA-X open reading frame in segment 3 of influenza A virus|
M Shi, BW Jagger, HM Wise, P Digard, EC Holmes, JK Taubenberger
Journal of virology 86 (22), 12411-12413, 2012
|Surveillance of bat coronaviruses in Kenya identifies relatives of human coronaviruses NL63 and 229E and their recombination history|
Y Tao, M Shi, C Chommanard, K Queen, J Zhang, W Markotter, IV Kuzmin, ...
Journal of virology 91 (5), 2017
|High-resolution metatranscriptomics reveals the ecological dynamics of mosquito-associated RNA viruses in Western Australia|
M Shi, P Neville, J Nicholson, JS Eden, A Imrie, EC Holmes
Journal of Virology 91 (17), 2017
|A tick-borne segmented RNA virus contains genome segments derived from unsegmented viral ancestors|
XC Qin, M Shi, JH Tian, XD Lin, DY Gao, JR He, JB Wang, CX Li, YJ Kang, ...
Proceedings of the National Academy of Sciences 111 (18), 6744-6749, 2014
|Genomic characterization of emergent pseudorabies virus in China reveals marked sequence divergence: evidence for the existence of two major genotypes|
C Ye, QZ Zhang, ZJ Tian, H Zheng, K Zhao, F Liu, JC Guo, W Tong, ...
Virology 483, 32-43, 2015
|Using metagenomics to characterize an expanding virosphere|
YZ Zhang, M Shi, EC Holmes
Cell 172 (6), 1168-1172, 2018