David R. Johnson
Cited by
Cited by
Challenges in microbial ecology: building predictive understanding of community function and dynamics
S Widder, RJ Allen, T Pfeiffer, TP Curtis, C Wiuf, WT Sloan, OX Cordero, ...
The ISME journal 10 (11), 2557-2568, 2016
Engineering microbial consortia for controllable outputs
SR Lindemann, HC Bernstein, HS Song, JK Fredrickson, MW Fields, ...
The ISME journal 10 (9), 2077-2084, 2016
Global diversity and biogeography of bacterial communities in wastewater treatment plants
L Wu, D Ning, B Zhang, Y Li, P Zhang, X Shan, Q Zhang, M Brown, Z Li, ...
Nature microbiology 4 (7), 1183-1195, 2019
Use of flow cytometric methods for single-cell analysis in environmental microbiology
K Czechowska, DR Johnson, JR van der Meer
Current opinion in microbiology 11 (3), 205-212, 2008
Micropollutant biotransformation kinetics associate with WWTP process parameters and microbial community characteristics
DE Helbling, DR Johnson, M Honti, K Fenner
Environmental science & technology 46 (19), 10579-10588, 2012
An Internal Reference Technique for Accurately Quantifying Specific mRNAs by Real-Time PCR with Application to the tceA Reductive Dehalogenase Gene
DR Johnson, PKH Lee, VF Holmes, L Alvarez-Cohen
Applied and environmental microbiology 71 (7), 3866-3871, 2005
Reductive Dehalogenase Gene Expression as a Biomarker for Physiological Activity of Dehalococcoides spp
PKH Lee, DR Johnson, VF Holmes, J He, L Alvarez-Cohen
Applied and Environmental Microbiology 72 (9), 6161-6168, 2006
Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and …
Y Men, H Feil, NC VerBerkmoes, MB Shah, DR Johnson, PKH Lee, ...
The ISME journal 6 (2), 410-421, 2012
Wastewater treatment plant resistomes are shaped by bacterial composition, genetic exchange, and upregulated expression in the effluent microbiomes
F Ju, K Beck, X Yin, A Maccagnan, CS McArdell, HP Singer, DR Johnson, ...
The ISME journal 13 (2), 346-360, 2019
Metabolic specialization and the assembly of microbial communities
DR Johnson, F Goldschmidt, EE Lilja, M Ackermann
The ISME journal 6 (11), 1985-1991, 2012
Temporal Transcriptomic Microarray Analysis of “Dehalococcoides ethenogenes” Strain 195 during the Transition into Stationary Phase
DR Johnson, EL Brodie, AE Hubbard, GL Andersen, SH Zinder, ...
Applied and Environmental Microbiology 74 (9), 2864-2872, 2008
Relative contribution of ammonia oxidizing bacteria and other members of nitrifying activated sludge communities to micropollutant biotransformation
Y Men, S Achermann, DE Helbling, DR Johnson, K Fenner
Water research 109, 217-226, 2017
Transcriptional Expression of the tceA Gene in a Dehalococcoides-Containing Microbial Enrichment
DR Johnson, PKH Lee, VF Holmes, AC Fortin, L Alvarez-Cohen
Applied and Environmental Microbiology 71 (11), 7145-7151, 2005
Association of biodiversity with the rates of micropollutant biotransformations among full-scale wastewater treatment plant communities
DR Johnson, DE Helbling, TK Lee, J Park, K Fenner, HPE Kohler, ...
Applied and environmental microbiology 81 (2), 666-675, 2015
A Real-Time PCR Method for Quantifying Viable Ascaris Eggs Using the First Internally Transcribed Spacer Region of Ribosomal DNA
BM Pecson, JA Barrios, DR Johnson, KL Nelson
Applied and Environmental Microbiology 72 (12), 7864-7872, 2006
The activity level of a microbial community function can be predicted from its metatranscriptome
DE Helbling, M Ackermann, K Fenner, HPE Kohler, DR Johnson
The ISME journal 6 (4), 902-904, 2012
Comparative Genomics of “Dehalococcoides ethenogenes” 195 and an Enrichment Culture Containing Unsequenced “Dehalococcoides” Strains
KA West, DR Johnson, P Hu, TZ DeSantis, EL Brodie, PKH Lee, H Feil, ...
Applied and Environmental Microbiology 74 (11), 3533-3540, 2008
The functional and taxonomic richness of wastewater treatment plant microbial communities are associated with each other and with ambient nitrogen and carbon availability
DR Johnson, TK Lee, J Park, K Fenner, DE Helbling
Environmental microbiology 17 (12), 4851-4860, 2015
Transcriptomic microarray analysis of corrinoid responsive genes in Dehalococcoides ethenogenes strain 195
DR Johnson, A Nemir, GL Andersen, SH Zinder, L Alvarez-Cohen
FEMS microbiology letters 294 (2), 198-206, 2009
A conceptual framework for invasion in microbial communities
M Kinnunen, A Dechesne, C Proctor, F Hammes, D Johnson, ...
The ISME journal 10 (12), 2773-2779, 2016
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