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David R. Johnson
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Challenges in microbial ecology: building predictive understanding of community function and dynamics
S Widder, RJ Allen, T Pfeiffer, TP Curtis, C Wiuf, WT Sloan, OX Cordero, ...
The ISME journal 10 (11), 2557-2568, 2016
6582016
Global diversity and biogeography of bacterial communities in wastewater treatment plants
L Wu, D Ning, B Zhang, Y Li, P Zhang, X Shan, Q Zhang, M Brown, Z Li, ...
Nature microbiology 4 (7), 1183-1195, 2019
5302019
Engineering microbial consortia for controllable outputs
SR Lindemann, HC Bernstein, HS Song, JK Fredrickson, MW Fields, ...
The ISME journal 10 (9), 2077-2084, 2016
3212016
Wastewater treatment plant resistomes are shaped by bacterial composition, genetic exchange, and upregulated expression in the effluent microbiomes
F Ju, K Beck, X Yin, A Maccagnan, CS McArdell, HP Singer, DR Johnson, ...
The ISME journal 13 (2), 346-360, 2019
3172019
Micropollutant biotransformation kinetics associate with WWTP process parameters and microbial community characteristics
DE Helbling, DR Johnson, M Honti, K Fenner
Environmental science & technology 46 (19), 10579-10588, 2012
2172012
Use of flow cytometric methods for single-cell analysis in environmental microbiology
K Czechowska, DR Johnson, JR van der Meer
Current opinion in microbiology 11 (3), 205-212, 2008
2012008
An Internal Reference Technique for Accurately Quantifying Specific mRNAs by Real-Time PCR with Application to the tceA Reductive Dehalogenase Gene
DR Johnson, PKH Lee, VF Holmes, L Alvarez-Cohen
Applied and environmental microbiology 71 (7), 3866-3871, 2005
1842005
Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and …
Y Men, H Feil, NC VerBerkmoes, MB Shah, DR Johnson, PKH Lee, ...
The ISME journal 6 (2), 410-421, 2012
1552012
Metabolic specialization and the assembly of microbial communities
DR Johnson, F Goldschmidt, EE Lilja, M Ackermann
The ISME journal 6 (11), 1985-1991, 2012
1482012
Reductive Dehalogenase Gene Expression as a Biomarker for Physiological Activity of Dehalococcoides spp
PKH Lee, DR Johnson, VF Holmes, J He, L Alvarez-Cohen
Applied and Environmental Microbiology 72 (9), 6161-6168, 2006
1482006
Relative contribution of ammonia oxidizing bacteria and other members of nitrifying activated sludge communities to micropollutant biotransformation
Y Men, S Achermann, DE Helbling, DR Johnson, K Fenner
Water research 109, 217-226, 2017
1472017
Association of biodiversity with the rates of micropollutant biotransformations among full-scale wastewater treatment plant communities
DR Johnson, DE Helbling, TK Lee, J Park, K Fenner, HPE Kohler, ...
Applied and environmental microbiology 81 (2), 666-675, 2015
1332015
A combination of extreme environmental conditions favor the prevalence of endospore-forming firmicutes
S Filippidou, T Wunderlin, C Dorador, V Molina, DR Johnson, P Junier
Frontiers in microbiology 7, 223369, 2016
1322016
Segregating metabolic processes into different microbial cells accelerates the consumption of inhibitory substrates
EE Lilja, DR Johnson
The ISME journal 10 (7), 1568-1578, 2016
1072016
A conceptual framework for invasion in microbial communities
M Kinnunen, A Dechesne, C Proctor, F Hammes, D Johnson, ...
The ISME journal 10 (12), 2773-2779, 2016
1042016
Temporal Transcriptomic Microarray Analysis of “Dehalococcoides ethenogenes” Strain 195 during the Transition into Stationary Phase
DR Johnson, EL Brodie, AE Hubbard, GL Andersen, SH Zinder, ...
Applied and Environmental Microbiology 74 (9), 2864-2872, 2008
1032008
Transcriptional Expression of the tceA Gene in a Dehalococcoides-Containing Microbial Enrichment
DR Johnson, PKH Lee, VF Holmes, AC Fortin, L Alvarez-Cohen
Applied and Environmental Microbiology 71 (11), 7145-7151, 2005
952005
Synthetic microbial ecology and the dynamic interplay between microbial genotypes
J Dolinšek, F Goldschmidt, DR Johnson
FEMS microbiology reviews 40 (6), 961-979, 2016
912016
The functional and taxonomic richness of wastewater treatment plant microbial communities are associated with each other and with ambient nitrogen and carbon availability
DR Johnson, TK Lee, J Park, K Fenner, DE Helbling
Environmental microbiology 17 (12), 4851-4860, 2015
902015
Comparing the resistance, resilience, and stability of replicate moving bed biofilm and suspended growth combined nitritation–anammox reactors
GF Wells, Y Shi, M Laureni, A Rosenthal, I Szivák, DG Weissbrodt, A Joss, ...
Environmental Science & Technology 51 (9), 5108-5117, 2017
892017
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