Emiley Eloe-Fadrosh
Emiley Eloe-Fadrosh
Metagenome Program Head, Joint Genome Institute
Verified email at lbl.gov - Homepage
Title
Cited by
Cited by
Year
Uncovering Earth’s virome
D Paez-Espino, EA Eloe-Fadrosh, GA Pavlopoulos, AD Thomas, ...
Nature 536 (7617), 425-430, 2016
4152016
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725-731, 2017
3732017
IMG/M v. 5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
IMA Chen, K Chu, K Palaniappan, M Pillay, A Ratner, J Huang, ...
Nucleic acids research 47 (D1), D666-D677, 2019
2492019
The human microbiome: from symbiosis to pathogenesis
EA Eloe-Fadrosh, DA Rasko
Annual review of medicine 64, 145-163, 2013
1522013
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
S Mukherjee, R Seshadri, NJ Varghese, EA Eloe-Fadrosh, ...
Nature biotechnology 35 (7), 676, 2017
1442017
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
R Seshadri, SC Leahy, GT Attwood, KH Teh, SC Lambie, AL Cookson, ...
Nature biotechnology 36 (4), 359, 2018
1362018
Compositional differences in particle‐associated and free‐living microbial assemblages from an extreme deep‐ocean environment
EA Eloe, CN Shulse, DW Fadrosh, SJ Williamson, EE Allen, DH Bartlett
Environmental microbiology reports 3 (4), 449-458, 2011
1182011
Metagenomics uncovers gaps in amplicon-based detection of microbial diversity
EA Eloe-Fadrosh, NN Ivanova, T Woyke, NC Kyrpides
Nature Microbiology 1 (4), 1-4, 2016
1152016
Functional dynamics of the gut microbiome in elderly people during probiotic consumption
EA Eloe-Fadrosh, A Brady, J Crabtree, EF Drabek, B Ma, A Mahurkar, ...
MBio 6 (2), 2015
872015
Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity
S Roux, JB Emerson, EA Eloe-Fadrosh, MB Sullivan
PeerJ 5, e3817, 2017
802017
Going deeper: metagenome of a hadopelagic microbial community
EA Eloe, DW Fadrosh, M Novotny, LZ Allen, M Kim, MJ Lombardo, ...
PloS one 6 (5), e20388, 2011
782011
Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs
EA Eloe-Fadrosh, D Paez-Espino, J Jarett, PF Dunfield, BP Hedlund, ...
Nature communications 7 (1), 1-10, 2016
772016
Minimum information about an uncultivated virus genome (MIUViG)
S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ...
Nature biotechnology 37 (1), 29-37, 2019
752019
Aerosol Mycobacterium tuberculosis infection causes rapid loss of diversity in gut microbiota
K Winglee, E Eloe-Fadrosh, S Gupta, H Guo, C Fraser, W Bishai
PloS one 9 (5), e97048, 2014
702014
The deep-sea bacterium Photobacterium profundum SS9 utilizes separate flagellar systems for swimming and swarming under high-pressure conditions
EA Eloe, FM Lauro, RF Vogel, DH Bartlett
Applied and environmental microbiology 74 (20), 6298-6305, 2008
692008
Impact of oral typhoid vaccination on the human gut microbiota and correlations with S. Typhi-specific immunological responses
EA Eloe-Fadrosh, MA McArthur, AM Seekatz, EF Drabek, DA Rasko, ...
PloS one 8 (4), e62026, 2013
582013
IMG/VR v. 2.0: an integrated data management and analysis system for cultivated and environmental viral genomes
D Paez-Espino, S Roux, IMA Chen, K Palaniappan, A Ratner, K Chu, ...
Nucleic acids research 47 (D1), D678-D686, 2019
512019
Differential response of the cynomolgus macaque gut microbiota to Shigella infection
AM Seekatz, A Panda, DA Rasko, FR Toapanta, EA Eloe-Fadrosh, ...
PloS one 8 (6), e64212, 2013
502013
Isolation and characterization of a psychropiezophilic alphaproteobacterium
EA Eloe, F Malfatti, J Gutierrez, K Hardy, WE Schmidt, K Pogliano, ...
Applied and environmental microbiology 77 (22), 8145-8153, 2011
462011
Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes
S Roux, M Krupovic, RA Daly, AL Borges, S Nayfach, F Schulz, A Sharrar, ...
Nature microbiology 4 (11), 1895-1906, 2019
392019
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