| Mucosal biofilm formation on middle-ear mucosa in the chinchilla model of otitis media GD Ehrlich, R Veeh, X Wang, JW Costerton, JD Hayes, FZ Hu, BJ Daigle, ... Jama 287 (13), 1710-1715, 2002 | 455 | 2002 |
| Independent component analysis: mining microarray data for fundamental human gene expression modules JM Engreitz, BJ Daigle Jr, JJ Marshall, RB Altman Journal of biomedical informatics 43 (6), 932-944, 2010 | 124 | 2010 |
| Accelerated maximum likelihood parameter estimation for stochastic biochemical systems BJ Daigle, MK Roh, LR Petzold, J Niemi BMC bioinformatics 13 (1), 1-18, 2012 | 63 | 2012 |
| Stochastic simulation service: bridging the gap between the computational expert and the biologist B Drawert, A Hellander, B Bales, D Banerjee, G Bellesia, BJ Daigle Jr, ... PLoS computational biology 12 (12), e1005220, 2016 | 53 | 2016 |
| Automated estimation of rare event probabilities in biochemical systems BJ Daigle Jr, MK Roh, DT Gillespie, LR Petzold The Journal of chemical physics 134 (4), 01B628, 2011 | 52 | 2011 |
| Core module biomarker identification with network exploration for breast cancer metastasis R Yang, BJ Daigle, LR Petzold, FJ Doyle BMC bioinformatics 13 (1), 1-11, 2012 | 45 | 2012 |
| Multi-omic biomarker identification and validation for diagnosing warzone-related post-traumatic stress disorder KR Dean, R Hammamieh, SH Mellon, D Abu-Amara, JD Flory, G Guffanti, ... Molecular psychiatry 25 (12), 3337-3349, 2020 | 39 | 2020 |
| Inferring single-cell gene expression mechanisms using stochastic simulation BJ Daigle Jr, M Soltani, LR Petzold, A Singh Bioinformatics 31 (9), 1428-1435, 2015 | 38 | 2015 |
| Whole-genome DNA methylation status associated with clinical PTSD measures of OIF/OEF veterans R Hammamieh, N Chakraborty, A Gautam, S Muhie, R Yang, D Donohue, ... Translational psychiatry 7 (7), e1169-e1169, 2017 | 35 | 2017 |
| State-dependent doubly weighted stochastic simulation algorithm for automatic characterization of stochastic biochemical rare events MK Roh, BJ Daigle Jr, DT Gillespie, LR Petzold The Journal of chemical physics 135 (23), 234108, 2011 | 31 | 2011 |
| Systems biology approach to understanding post-traumatic stress disorder GS Thakur, BJ Daigle Jr, KR Dean, Y Zhang, M Rodriguez-Fernandez, ... Molecular BioSystems 11 (4), 980-993, 2015 | 28 | 2015 |
| Mice lacking the β2 adrenergic receptor have a unique genetic profile before and after focal brain ischaemia RE White, C Palm, L Xu, E Ling, M Ginsburg, JD Bernie Jr, R Han, ... ASN neuro 4 (5), AN20110020, 2012 | 25 | 2012 |
| Core modular blood and brain biomarkers in social defeat mouse model for post traumatic stress disorder R Yang, BJ Daigle Jr, SY Muhie, R Hammamieh, M Jett, L Petzold, ... BMC systems biology 7 (1), 1-12, 2013 | 23 | 2013 |
| M-BISON: microarray-based integration of data sources using networks BJ Daigle, RB Altman BMC bioinformatics 9 (1), 1-17, 2008 | 14 | 2008 |
| Using pre-existing microarray datasets to increase experimental power: application to insulin resistance BJ Daigle Jr, A Deng, T McLaughlin, SW Cushman, MC Cam, G Reaven, ... PLoS computational biology 6 (3), e1000718, 2010 | 13 | 2010 |
| Prognostic analysis of histopathological images using pre-trained convolutional neural networks: application to hepatocellular carcinoma L Lu, BJ Daigle Jr PeerJ 8, e8668, 2020 | 10 | 2020 |
| Identification of disease states associated with coagulopathy in trauma Y Zhang, TB Wu, BJ Daigle, M Cohen, L Petzold BMC medical informatics and decision making 16 (1), 1-9, 2016 | 8 | 2016 |
| Current progress in static and dynamic modeling of biological networks BJ Daigle, BS Srinivasan, JA Flannick, AF Novak, S Batzoglou Systems Biology for Signaling Networks, 13-73, 2010 | 8 | 2010 |
| Nonrandom insertion site preferences for the SB transposon in vitro and in vivo SR Yant, XL Wu, Y Huang, B Daigle Molecular Therapy 9, S309-S310, 2004 | 7 | 2004 |
| icHET: interactive visualization of cytoplasmic heteroplasmy V Phan, DT Pham, C Melton, AJ Ramsey, BJ Daigle Jr, JR Mandel Bioinformatics 35 (21), 4411-4412, 2019 | 4 | 2019 |
