Stephen Ramsey
Stephen Ramsey
Assistant Professor, Oregon State University
Verified email at oregonstate.edu - Homepage
Title
Cited by
Cited by
Year
A data integration methodology for systems biology
D Hwang, AG Rust, S Ramsey, JJ Smith, DM Leslie, AD Weston, ...
Proceedings of the National Academy of Sciences 102 (48), 17296-17301, 2005
3262005
Dizzy: stochastic simulation of large-scale genetic regulatory networks
S Ramsey, D Orrell, H Bolouri
Journal of bioinformatics and computational biology 3 (02), 415-436, 2005
2892005
Function of C/EBPδ in a regulatory circuit that discriminates between transient and persistent TLR4-induced signals
V Litvak, SA Ramsey, AG Rust, DE Zak, KA Kennedy, AE Lampano, ...
Nature immunology 10 (4), 437, 2009
2782009
Transport in two-dimensional paper networks
E Fu, SA Ramsey, P Kauffman, B Lutz, P Yager
Microfluidics and nanofluidics 10 (1), 29-35, 2011
2742011
Gene expression dynamics in the macrophage exhibit criticality
M Nykter, ND Price, M Aldana, SA Ramsey, SA Kauffman, LE Hood, ...
Proceedings of the National Academy of Sciences 105 (6), 1897-1900, 2008
2132008
Enhanced sensitivity of lateral flow tests using a two-dimensional paper network format
E Fu, T Liang, J Houghtaling, S Ramachandran, SA Ramsey, B Lutz, ...
Analytical chemistry 83 (20), 7941-7946, 2011
2022011
Uncovering a macrophage transcriptional program by integrating evidence from motif scanning and expression dynamics
SA Ramsey, SL Klemm, DE Zak, KA Kennedy, V Thorsson, B Li, ...
PLoS computational biology 4 (3), 2008
1852008
Method and system for directing requests for content to a content server based on network performance
M Ayers, BJ Black, C Brown, J Carlson, D Cohn, S Laird, J Miller, ...
US Patent 7,555,542, 2009
1762009
Dynamic analysis of MAPK signaling using a high-throughput microfluidic single-cell imaging platform
RJ Taylor, D Falconnet, A Niemistö, SA Ramsey, S Prinz, I Shmulevich, ...
Proceedings of the National Academy of Sciences 106 (10), 3758-3763, 2009
1652009
A data integration methodology for systems biology: experimental verification
D Hwang, JJ Smith, DM Leslie, AD Weston, AG Rust, S Ramsey, ...
Proceedings of the National Academy of Sciences 102 (48), 17302-17307, 2005
1522005
Cholesterol loading reprograms the microRNA-143/145–myocardin axis to convert aortic smooth muscle cells to a dysfunctional macrophage-like phenotype
Y Vengrenyuk, H Nishi, X Long, M Ouimet, N Savji, FO Martinez, ...
Arteriosclerosis, thrombosis, and vascular biology 35 (3), 535-546, 2015
1502015
ATF3, an adaptive-response gene, enhances TGFβ signaling and cancer-initiating cell features in breast cancer cells
X Yin, CC Wolford, YS Chang, SJ McConoughey, SA Ramsey, A Aderem, ...
Journal of cell science 123 (20), 3558-3565, 2010
1302010
Method and system for optimizing routing through multiple available internet route providers
A Ahuja, M Ayers, B Black, C Brown, DT Cohn, S Ramsey, O Ronen, ...
US Patent 6,981,055, 2005
1132005
Dual feedback loops in the GAL regulon suppress cellular heterogeneity in yeast
SA Ramsey, JJ Smith, D Orrell, M Marelli, TW Petersen, P de Atauri, ...
Nature genetics 38 (9), 1082-1087, 2006
1102006
Inflammatory Ly6Chi monocytes and their conversion to M2 macrophages drive atherosclerosis regression
K Rahman, Y Vengrenyuk, SA Ramsey, NR Vila, NM Girgis, J Liu, ...
The Journal of clinical investigation 127 (8), 2904-2915, 2017
1092017
ATF3 protects against atherosclerosis by suppressing 25-hydroxycholesterol–induced lipid body formation
ES Gold, SA Ramsey, MJ Sartain, J Selinummi, I Podolsky, DJ Rodriguez, ...
Journal of Experimental Medicine 209 (4), 807-817, 2012
992012
Nonequilibrium inflaton dynamics and reheating: Back reaction of parametric particle creation and curved spacetime effects
SA Ramsey, BL Hu
Physical Review D 56 (2), 678, 1997
871997
O (N) quantum fields in curved spacetime
SA Ramsey, BL Hu
Physical Review D 56 (2), 661, 1997
831997
A systems biology approach to understanding atherosclerosis
SA Ramsey, ES Gold, A Aderem
EMBO molecular medicine 2 (3), 79-89, 2010
802010
Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites
SA Ramsey, TA Knijnenburg, KA Kennedy, DE Zak, M Gilchrist, ES Gold, ...
Bioinformatics 26 (17), 2071-2075, 2010
702010
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Articles 1–20