Kathryn Holt
Kathryn Holt
Monash University & LSHTM
Verified email at lshtm.ac.uk - Homepage
TitleCited byYear
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans
I Comas, M Coscolla, T Luo, S Borrell, KE Holt, M Kato-Maeda, J Parkhill, ...
Nature genetics 45 (10), 1176-1182, 2013
6322013
High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi
KE Holt, J Parkhill, CJ Mazzoni, P Roumagnac, FX Weill, I Goodhead, ...
Nature genetics 40 (8), 987-993, 2008
4552008
Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4
New England Journal of Medicine 365 (8), 718-724, 2011
4532011
Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype
RA Kingsley, CL Msefula, NR Thomson, S Kariuki, KE Holt, MA Gordon, ...
Genome research 19 (12), 2279-2287, 2009
3732009
SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
M Inouye, H Dashnow, LA Raven, MB Schultz, BJ Pope, T Tomita, J Zobel, ...
Genome Medicine 6 (11), 1-16, 2014
3612014
The Infant Nasopharyngeal Microbiome Impacts Severity of Lower Respiratory Infection and Risk of Asthma Development
SM Teo, D Mok, K Pham, M Kusel, M Serralha, N Troy, BJ Holt, BJ Hales, ...
Cell Host and Microbe 17 (5), 704-715, 2015
3322015
Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health
KE Holt, H Wertheim, RN Zadoks, S Baker, CA Whitehouse, D Dance, ...
Proceedings of the National Academy of Sciences 112 (27), E3574-E3581, 2015
3262015
Evolutionary dynamics of Clostridium difficile over short and long time scales
M He, M Sebaihia, TD Lawley, RA Stabler, LF Dawson, MJ Martin, KE Holt, ...
Proceedings of the National Academy of Sciences 107 (16), 7527, 2010
3052010
An immunoepidemiological approach to asthma: identification of in-vitro T cell response patterns associated with different wheezing phenotypes in children
T Heaton, J Rowe, S Turner, RC Aalberse, N De Klerk, D Suriyaarachchi, ...
The Lancet 365 (9454), 142-149, 2005
3052005
Unicycler: resolving bacterial genome assemblies from short and long sequencing reads
RR Wick, LM Judd, CL Gorrie, KE Holt
PLOS Computational Biology 13 (6), e1005595, 2017
3002017
Bandage: interactive visualization of de novo genome assemblies
RR Wick, MB Schultz, J Zobel, KE Holt
Bioinformatics 31 (20), 3350-2, 2015
2162015
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter-and intracontinental transmission events
VK Wong, S Baker, DJ Pickard, J Parkhill, AJ Page, NA Feasey, ...
Nature Genetics 47 (6), 632-639, 2015
2052015
Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe
KE Holt, S Baker, FX Weill, EC Holmes, A Kitchen, J Yu, V Sangal, ...
Nature genetics 44 (9), 1056-1059, 2012
1712012
Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi
K Holt, N Thomson, J Wain, G Langridge, R Hasan, Z Bhutta, M Quail, ...
BMC genomics 10 (1), 36, 2009
1302009
Typhoid in Kenya is associated with a dominant multidrug-resistant Salmonella enterica serovar Typhi haplotype that is also widespread in Southeast Asia
S Kariuki, G Revathi, J Kiiru, DM Mengo, J Mwituria, J Muyodi, A Munyalo, ...
Journal of clinical microbiology 48 (6), 2171, 2010
1172010
On the origin of Mycobacterium ulcerans, the causative agent of buruli ulcer
KD Doig, KE Holt, JAM Fyfe, CJ Lavender, M Eddyani, F Portaels, ...
BMC genomics 13 (1), 258, 2012
1032012
Beginner’s guide to comparative bacterial genome analysis using next-generation sequence data
DJ Edwards, KE Holt
Microb Inform Exp 3 (1), 2, 2013
942013
Short read sequence typing (SRST): multi-locus sequence types from short reads
M Inouye, TC Conway, J Zobel, KE Holt
BMC genomics 13 (1), 338, 2012
862012
Tracking the establishment of local endemic populations of an emergent enteric pathogen
KE Holt, TVT Nga, DP Thanh, H Vinh, DW Kim, MPV Tra, JI Campbell, ...
Proceedings of the National Academy of Sciences 110 (43), 17522-17527, 2013
822013
Emergence of a Globally Dominant IncHI1 Plasmid Type Associated with Multiple Drug Resistant Typhoid
KE Holt, MD Phan, S Baker, PT Duy, TVT Nga, S Nair, AK Turner, C Walsh, ...
PLoS Neglected Tropical Diseases 5 (7), e1245, 2011
822011
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Articles 1–20