Mark James Cowley
Mark James Cowley
Computational Biology Group leader, Children's Cancer Institute
Verified email at ccia.org.au - Homepage
TitleCited byYear
Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes
AV Biankin, N Waddell, KS Kassahn, MC Gingras, LB Muthuswamy, ...
Nature 491 (7424), 399, 2012
11002012
Whole genomes redefine the mutational landscape of pancreatic cancer
N Waddell, M Pajic, AM Patch, DK Chang, KS Kassahn, P Bailey, ...
Nature 518 (7540), 495, 2015
8892015
Genomic analyses identify molecular subtypes of pancreatic cancer
P Bailey, DK Chang, K Nones, AL Johns, AM Patch, MC Gingras, ...
Nature 531 (7592), 47, 2016
6792016
PINA v2. 0: mining interactome modules
MJ Cowley, M Pinese, KS Kassahn, N Waddell, JV Pearson, ...
Nucleic acids research 40 (D1), D862-D865, 2011
2262011
The deubiquitinase USP9X suppresses pancreatic ductal adenocarcinoma
PA Pérez-Mancera, AG Rust, L van der Weyden, G Kristiansen, A Li, ...
Nature, 2012
2032012
Consolidation of the cancer genome into domains of repressive chromatin by long-range epigenetic silencing (LRES) reduces transcriptional plasticity
MW Coolen, C Stirzaker, JZ Song, AL Statham, Z Kassir, CS Moreno, ...
Nature cell biology 12 (3), 235, 2010
1752010
Whole-genome landscape of pancreatic neuroendocrine tumours
A Scarpa, DK Chang, K Nones, V Corbo, AM Patch, P Bailey, RT Lawlor, ...
Nature 543 (7643), 65, 2017
1532017
Sleeping Beauty mutagenesis reveals cooperating mutations and pathways in pancreatic adenocarcinoma
KM Mann, JM Ward, CCK Yew, A Kovochich, DW Dawson, MA Black, ...
Proceedings of the National Academy of Sciences 109 (16), 5934-5941, 2012
1502012
Inheritance of coronary artery disease in men: an analysis of the role of the Y chromosome
FJ Charchar, LDS Bloomer, TA Barnes, MJ Cowley, CP Nelson, Y Wang, ...
The Lancet 379 (9819), 915-922, 2012
1412012
Differential regulation of the Let-7 family of microRNAs in CD4+ T cells alters IL-10 expression
S Swaminathan, K Suzuki, N Seddiki, W Kaplan, MJ Cowley, CL Hood, ...
The Journal of Immunology, 1101196, 2012
1002012
Normalization and statistical analysis of quantitative proteomics data generated by metabolic labeling
L Ting, MJ Cowley, SL Hoon, M Guilhaus, MJ Raftery, R Cavicchioli
Molecular & Cellular Proteomics 8 (10), 2227-2242, 2009
1002009
Genome‐wide DNA methylation patterns in pancreatic ductal adenocarcinoma reveal epigenetic deregulation of SLIT‐ROBO, ITGA2 and MET signaling
K Nones, N Waddell, S Song, AM Patch, D Miller, A Johns, J Wu, ...
International journal of cancer 135 (5), 1110-1118, 2014
932014
The influence of genetic variation on gene expression
RBH Williams, EKF Chan, MJ Cowley, PFR Little
Genome research 17 (12), 1707-1716, 2007
912007
Gene-expression profiling of gram-positive and gram-negative sepsis in critically ill patients
BMP Tang, AS McLean, IW Dawes, SJ Huang, MJ Cowley, RCY Lin
Critical care medicine 36 (4), 1125-1128, 2008
842008
Cold adaptation in the marine bacterium, Sphingopyxis alaskensis, assessed using quantitative proteomics
L Ting, TJ Williams, MJ Cowley, FM Lauro, M Guilhaus, MJ Raftery, ...
Environmental microbiology 12 (10), 2658-2676, 2010
822010
Mutation allele burden remains unchanged in chronic myelomonocytic leukaemia responding to hypomethylating agents
J Merlevede, N Droin, T Qin, K Meldi, K Yoshida, M Morabito, E Chautard, ...
Nature communications 7, 10767, 2016
662016
Histomolecular phenotypes and outcome in adenocarcinoma of the ampulla of vater
DK Chang, NB Jamieson, AL Johns, CJ Scarlett, M Pajic, A Chou, ...
Journal of Clinical Oncology 31 (10), 1348-1356, 2013
662013
A sustained dietary change increases epigenetic variation in isogenic mice
CCY Li, JE Cropley, MJ Cowley, T Preiss, DIK Martin, CM Suter
PLoS genetics 7 (4), e1001380, 2011
662011
c-Myc and Her2 cooperate to drive a stem-like phenotype with poor prognosis in breast cancer
R Nair, DL Roden, WS Teo, A McFarland, S Junankar, S Ye, A Nguyen, ...
Oncogene 33 (30), 3992, 2014
652014
Clinical and molecular characterization of HER2 amplified-pancreatic cancer
A Chou, N Waddell, MJ Cowley, AJ Gill, DK Chang, AM Patch, K Nones, ...
Genome medicine 5 (8), 78, 2013
622013
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