Li Shen
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Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
Distinct epigenomic landscapes of pluripotent and lineage-committed human cells
RD Hawkins, GC Hon, LK Lee, QM Ngo, R Lister, M Pelizzola, LE Edsall, ...
Cell stem cell 6 (5), 479-491, 2010
ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases
L Shen, N Shao, X Liu, E Nestler
BMC genomics 15 (1), 284, 2014
HDAC2 regulates atypical antipsychotic responses through the modulation of mGlu2 promoter activity
M Kurita, T Holloway, A García-Bea, A Kozlenkov, AK Friedman, ...
Nature Neuroscience 15 (9), 1245-1254, 2012
Sex-specific transcriptional signatures in human depression
B Labonté, O Engmann, I Purushothaman, C Menard, J Wang, C Tan, ...
Nature medicine 23 (9), 1102, 2017
β-catenin mediates stress resilience through Dicer1/microRNA regulation
C Dias, J Feng, H Sun, N yi Shao, MS Mazei-Robison, D Damez-Werno, ...
Nature 516 (7529), 51-55, 2014
diffReps: detecting differential chromatin modification sites from ChIP-seq data with biological replicates
L Shen, NY Shao, X Liu, I Maze, J Feng, EJ Nestler
PloS one 8 (6), e65598, 2013
Cocaine dynamically regulates heterochromatin and repetitive element unsilencing in nucleus accumbens
I Maze, J Feng, MB Wilkinson, HS Sun, L Shen, EJ Nestler
Proceedings of the National Academy of Sciences 108 (7), 3035, 2011
Sex differences in nucleus accumbens transcriptome profiles associated with susceptibility versus resilience to subchronic variable stress
GE Hodes, ML Pfau, I Purushothaman, HF Ahn, SA Golden, DJ Christoffel, ...
Journal of Neuroscience 35 (50), 16362-16376, 2015
Locus-specific epigenetic remodeling controls addiction-and depression-related behaviors
EA Heller, HM Cates, CJ Peña, H Sun, N Shao, J Feng, SA Golden, ...
Nature neuroscience 17 (12), 1720-1727, 2014
Critical role of histone turnover in neuronal transcription and plasticity
I Maze, W Wenderski, KM Noh, RC Bagot, N Tzavaras, I Purushothaman, ...
Neuron 87 (1), 77-94, 2015
Role of Tet1 and 5-hydroxymethylcytosine in cocaine action
J Feng, N Shao, KE Szulwach, V Vialou, J Huynh, C Zhong, T Le, ...
Nature neuroscience 18 (4), 536-544, 2015
Early life stress confers lifelong stress susceptibility in mice via ventral tegmental area OTX2
CJ Peña, HG Kronman, DM Walker, HM Cates, RC Bagot, ...
Science 356 (6343), 1185-1188, 2017
Circuit-wide transcriptional profiling reveals brain region-specific gene networks regulating depression susceptibility
RC Bagot, HM Cates, I Purushothaman, ZS Lorsch, DM Walker, J Wang, ...
Neuron 90 (5), 969-983, 2016
Neurobiological Sequelae of Witnessing Stressful Events in Adult Mice
BL Warren, VF Vialou, SD Iñiguez, LF Alcantara, KN Wright, J Feng, ...
Biological Psychiatry, 2012
Dimension reduction-based penalized logistic regression for cancer classification using microarray data
L Shen, EC Tan
IEEE/ACM Transactions on computational biology and bioinformatics 2 (2), 166-175, 2005
Chronic cocaine-regulated epigenomic changes in mouse nucleus accumbens
J Feng, M Wilkinson, X Liu, I Purushothaman, D Ferguson, V Vialou, ...
Genome biology 15 (4), R65, 2014
Morphine Epigenomically Regulates Behavior through Alterations in Histone H3 Lysine 9 Dimethylation in the Nucleus Accumbens
HS Sun, I Maze, DM Dietz, KN Scobie, PJ Kennedy, D Damez-Werno, ...
The Journal of Neuroscience 32 (48), 17454-17464, 2012
Epigenetic regulation of brain region-specific microglia clearance activity
P Ayata, A Badimon, HJ Strasburger, MK Duff, SE Montgomery, YHE Loh, ...
Nature neuroscience 21 (8), 1049-1060, 2018
ENL links histone acetylation to oncogenic gene expression in acute myeloid leukaemia
L Wan, H Wen, Y Li, J Lyu, Y Xi, T Hoshii, JK Joseph, X Wang, YHE Loh, ...
Nature 543 (7644), 265-269, 2017
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