Georgios A. Pavlopoulos
Georgios A. Pavlopoulos
Head of Bioinformatics (Associate Professor), BSRC Alexander Fleming
Verified email at fleming.gr - Homepage
Title
Cited by
Cited by
Year
Using graph theory to analyze biological networks
GA Pavlopoulos, M Secrier, CN Moschopoulos, TG Soldatos, S Kossida, ...
BioData mining 4 (1), 10, 2011
4962011
Uncovering Earth's Virome
D Paez-Espino, EA Eloe-Fadrosh, GA Pavlopoulos, AD Thomas, ...
Nature, 2016
4152016
Protein structure determination using metagenome sequence data
DB Sergey Ovchinnikov, Hahnbeom Park, Neha Varghese, Po-Ssu Huang, Georgios ...
Science 355 (6322), 294-298, 2017
3112017
Metagenomics: tools and insights for analyzing next-generation sequencing data derived from biodiversity studies
A Oulas, C Pavloudi, P Polymenakou, GA Pavlopoulos, N Papanikolaou, ...
Bioinformatics and biology insights 9, BBI. S12462, 2015
2632015
A survey of visualization tools for biological network analysis
GA Pavlopoulos, AL Wegener, R Schneider
Biodata mining 1, 12, 2008
2032008
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
S Mukherjee, R Seshadri, NJ Varghese, EA Eloe-Fadrosh, ...
Nature biotechnology 35 (7), 676, 2017
1442017
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
R Seshadri, SC Leahy, GT Attwood, KH Teh, SC Lambie, AL Cookson, ...
Nature biotechnology 36 (4), 359, 2018
1362018
Arena3D: visualization of biological networks in 3D
GA Pavlopoulos, S O'Donoghue, V Satagopam, T Soldatos, E Pafilis, ...
BMC systems biology 2 (1), 104, 2008
1102008
IMG/VR: A database of cultured and uncultured DNA Viruses and Retroviruses
D Paez-Espino, IMA Chen A, K Palaniappan, A Ratner, K Chu, E Szeto, ...
Nucleic Acids Research, 2016
962016
Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future
GA Pavlopoulos, D Malliarakis, N Papanikolaou, T Theodosiou, A Enright, ...
GigaScience 4 (38), 2015
752015
Protein–protein interaction predictions using text mining methods
N Papanikolaou, GA Pavlopoulos, T Theodosiou, I Iliopoulos
Methods 74, 47-53, 2015
702015
Unraveling genomic variation from next generation sequencing data
GA Pavlopoulos, A Oulas, E Iacucci, A Sifrim, Y Moreau, R Schneider, ...
BioData Mining 6 (13), 2013
622013
A reference guide for tree analysis and visualization
GA Pavlopoulos, TG Soldatos, A Barbosa-Silva, R Schneider
BioData mining 3 (1), 1, 2010
602010
Medusa: A tool for exploring and clustering biological networks
GA Pavlopoulos, S Hooper, A Sifrim, R Schneider, J Aerts
BMC Research Notes 4 (1), 384, 2011
522011
Large-scale analyses of human microbiomes reveal thousands of small, novel genes
H Sberro, BJ Fremin, S Zlitni, F Edfors, N Greenfield, MP Snyder, ...
Cell 178 (5), 1245-1259. e14, 2019
462019
Arena3D: visualizing time-driven phenotypic differences in biological systems
M Secrier, GA Pavlopoulos, J Aerts, R Schneider
BMC Bioinformatics 13 (1), 45, 2012
442012
LAITOR-Literature Assistant for Identification of Terms co-Occurrences and Relationships
A Barbosa-Silva, T Soldatos, I Magalh„es, GA Pavlopoulos, JF Fontaine, ...
BMC bioinformatics 11 (1), 70, 2010
422010
HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks
A Azad, GA Pavlopoulos, CA Ouzounis, NC Kyrpides, A BuluÁ
Nucleic acids research 46 (6), e33-e33, 2018
362018
Non-targeted virus sequence discovery pipeline and virus clustering for metagenomic data
D Paez-Espino, GA Pavlopoulos, NN Ivanova, K NC
Nature Protocols, 1673–1682, 2017
342017
Annotate-it: a Swiss-knife approach to annotation, analysis and interpretation of single nucleotide variation in human disease
A Sifrim, JKJ Van Houdt, LC Tranchevent, B Nowakowska, R Sakai, ...
Genome Medicine 4, 73, 2012
342012
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Articles 1–20