Jeremy J Yang
TitleCited byYear
The origin of intermediary metabolism
HJ Morowitz, JD Kostelnik, J Yang, GD Cody
Proceedings of the National Academy of Sciences 97 (14), 7704-7708, 2000
2952000
Stigmata: An algorithm to determine structural commonalities in diverse datasets
NE Shemetulskis, D Weininger, CJ Blankley, JJ Yang, C Humblet
Journal of chemical information and computer sciences 36 (4), 862-871, 1996
1271996
DrugCentral: online drug compendium
O Ursu, J Holmes, J Knockel, CG Bologa, JJ Yang, SL Mathias, SJ Nelson, ...
Nucleic acids research, gkw993, 2016
972016
Associating drugs, targets and clinical outcomes into an integrated network affords a new platform for computer‐aided drug repurposing
TI Oprea, SK Nielsen, O Ursu, JJ Yang, O Taboureau, SL Mathias, ...
Molecular informatics 30 (2‐3), 100-111, 2011
952011
Unexplored therapeutic opportunities in the human genome
TI Oprea, CG Bologa, S Brunak, A Campbell, GN Gan, A Gaulton, ...
Nature reviews Drug discovery 17 (5), 317, 2018
892018
Pharos: collating protein information to shed light on the druggable genome
DT Nguyen, S Mathias, C Bologa, S Brunak, N Fernandez, A Gaulton, ...
Nucleic acids research 45 (D1), D995-D1002, 2017
882017
Analysis and hit filtering of a very large library of compounds screened against Mycobacterium tuberculosis
S Ekins, T Kaneko, CA Lipinski, J Bradford, K Dole, A Spektor, K Gregory, ...
Mol. BioSyst. 6 (11), 2316-2324, 2010
662010
Structural simplification of bioactive natural products with multicomponent synthesis. 3. Fused uracil-containing heterocycles as novel topoisomerase-targeting agents
NM Evdokimov, S Van Slambrouck, P Heffeter, L Tu, B Le Calve, ...
Journal of medicinal chemistry 54 (7), 2012-2021, 2011
592011
Structural Simplification of Bioactive Natural Products with Multicomponent Synthesis. 3. Fused Uracil-Containing Heterocycles as Novel Topoisomerase-Targeting Agents
NM Evdokimov, S Van Slambrouck, P Heffeter, L Tu, B Le Calvé, ...
Journal of Medicinal Chemistry, 2011
592011
Badapple: promiscuity patterns from noisy evidence
JJ Yang, O Ursu, CA Lipinski, LA Sklar, TI Oprea, CG Bologa
Journal of cheminformatics 8 (1), 29, 2016
432016
The CARLSBAD database: a confederated database of chemical bioactivities
SL Mathias, J Hines-Kay, JJ Yang, G Zahoransky-Kohalmi, CG Bologa, ...
Database 2013, 2013
232013
Drug target ontology to classify and integrate drug discovery data
Y Lin, S Mehta, H Küçük-McGinty, JP Turner, D Vidovic, M Forlin, A Koleti, ...
Journal of biomedical semantics 8 (1), 50, 2017
212017
BioAssay Research Database (BARD): chemical biology and probe-development enabled by structured metadata and result types
EA Howe, A De Souza, DL Lahr, S Chatwin, P Montgomery, ...
Nucleic acids research 43 (D1), D1163-D1170, 2015
212015
An overview of the challenges in designing, integrating, and delivering BARD: a public chemical-biology resource and query portal for multiple organizations, locations, and …
A De Souza, JA Bittker, DL Lahr, S Brudz, S Chatwin, TI Oprea, A Waller, ...
Journal of biomolecular screening 19 (5), 614-627, 2014
202014
DrugCentral 2018: an update
O Ursu, J Holmes, CG Bologa, JJ Yang, SL Mathias, V Stathias, ...
Nucleic acids research 47 (D1), D963-D970, 2019
182019
Novel phenotypic outcomes identified for a public collection of approved drugs from a publicly accessible panel of assays
JA Lee, P Shinn, S Jaken, S Oliver, FS Willard, S Heidler, RB Peery, ...
PloS one 10 (7), 2015
182015
PIBAS FedSPARQL: a web-based platform for integration and exploration of bioinformatics datasets
M Djokic-Petrovic, V Cvjetkovic, J Yang, M Zivanovic, DJ Wild
Journal of biomedical semantics 8 (1), 42, 2017
72017
TIN-X: target importance and novelty explorer
DC Cannon, JJ Yang, SL Mathias, O Ursu, S Mani, A Waller, SC Schürer, ...
Bioinformatics 33 (16), 2601-2603, 2017
72017
edge2vec: Learning node representation using edge semantics
Z Gao, G Fu, C Ouyang, S Tsutsui, X Liu, Y Ding
arXiv preprint arXiv:1809.02269, 2018
62018
Formalizing drug indications on the road to therapeutic intent
SJ Nelson, TI Oprea, O Ursu, CG Bologa, A Zaveri, J Holmes, JJ Yang, ...
Journal of the American Medical Informatics Association 24 (6), 1169-1172, 2017
42017
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Articles 1–20