| Identification and characterization of the potential promoter regions of 1031 kinds of human genes Y Suzuki, T Tsunoda, J Sese, H Taira, J Mizushima-Sugano, H Hata, ... Genome research 11 (5), 677-684, 2001 | 334 | 2001 |
| Semi-supervised local Fisher discriminant analysis for dimensionality reduction M Sugiyama, T Idé, S Nakajima, J Sese Machine learning 78 (1), 35-61, 2010 | 316 | 2010 |
| Transversing itemset lattices with statistical metric pruning S Morishita, J Sese Proceedings of the nineteenth ACM SIGMOD-SIGACT-SIGART symposium on …, 2000 | 296 | 2000 |
| High-dimensional and large-scale phenotyping of yeast mutants Y Ohya, J Sese, M Yukawa, F Sano, Y Nakatani, TL Saito, A Saka, ... Proceedings of the National Academy of Sciences 102 (52), 19015-19020, 2005 | 272 | 2005 |
| A large-scale full-length cDNA analysis to explore the budding yeast transcriptome F Miura, N Kawaguchi, J Sese, A Toyoda, M Hattori, S Morishita, T Ito Proceedings of the National Academy of Sciences 103 (47), 17846-17851, 2006 | 265 | 2006 |
| Diverse transcriptional initiation revealed by fine, large‐scale mapping of mRNA start sites Y Suzuki, H Taira, T Tsunoda, J Mizushima‐Sugano, J Sese, H Hata, ... EMBO reports 2 (5), 388-393, 2001 | 186 | 2001 |
| KDD Cup 2001 report J Cheng, C Hatzis, H Hayashi, MA Krogel, S Morishita, D Page, J Sese ACM SIGKDD Explorations Newsletter 3 (2), 47-64, 2002 | 157 | 2002 |
| Ch IP‐Atlas: a data‐mining suite powered by full integration of public Ch IP‐seq data S Oki, T Ohta, G Shioi, H Hatanaka, O Ogasawara, Y Okuda, H Kawaji, ... EMBO reports 19 (12), e46255, 2018 | 150 | 2018 |
| 5′-end SAGE for the analysis of transcriptional start sites S Hashimoto, Y Suzuki, Y Kasai, K Morohoshi, T Yamada, J Sese, ... Nature biotechnology 22 (9), 1146-1149, 2004 | 144 | 2004 |
| Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism PY Novikova, N Hohmann, V Nizhynska, T Tsuchimatsu, J Ali, G Muir, ... Nature genetics 48 (9), 1077-1082, 2016 | 137 | 2016 |
| Mutual information estimation reveals global associations between stimuli and biological processes T Suzuki, M Sugiyama, T Kanamori, J Sese BMC bioinformatics 10 (1), 1-12, 2009 | 129 | 2009 |
| Approximating mutual information by maximum likelihood density ratio estimation T Suzuki, M Sugiyama, J Sese, T Kanamori New challenges for feature selection in data mining and knowledge discovery …, 2008 | 109 | 2008 |
| A hybrid space-filling and force-directed layout method for visualizing multiple-category graphs T Itoh, C Muelder, KL Ma, J Sese 2009 IEEE Pacific Visualization Symposium, 121-128, 2009 | 103 | 2009 |
| Statistical significance of combinatorial regulations A Terada, M Okada-Hatakeyama, K Tsuda, J Sese Proceedings of the National Academy of Sciences 110 (32), 12996-13001, 2013 | 102 | 2013 |
| Compound–protein interaction prediction with end-to-end learning of neural networks for graphs and sequences M Tsubaki, K Tomii, J Sese Bioinformatics 35 (2), 309-318, 2019 | 100 | 2019 |
| Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis S Akama, R Shimizu-Inatsugi, KK Shimizu, J Sese Nucleic acids research 42 (6), e46-e46, 2014 | 85 | 2014 |
| Gene expression profile in human leukocytes S Hashimoto, S Nagai, J Sese, T Suzuki, A Obata, T Sato, N Toyoda, ... Blood, The Journal of the American Society of Hematology 101 (9), 3509-3513, 2003 | 70 | 2003 |
| Genome assembly and annotation of Arabidopsis halleri, a model for heavy metal hyperaccumulation and evolutionary ecology RV Briskine, T Paape, R Shimizu‐Inatsugi, T Nishiyama, S Akama, J Sese, ... Molecular Ecology Resources 17 (5), 1025-1036, 2017 | 60 | 2017 |
| BodyMap: a collection of 3′ ESTs for analysis of human gene expression information S Kawamoto, J Yoshii, K Mizuno, K Ito, Y Miyamoto, T Ohnishi, R Matoba, ... Genome research 10 (11), 1817-1827, 2000 | 54 | 2000 |
| Constrained clusters of gene expression profiles with pathological features J Sese, Y Kurokawa, M Monden, K Kato, S Morishita Bioinformatics 20 (17), 3137-3145, 2004 | 53 | 2004 |
