Alvis Brazma
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
114662012
Minimum information about a microarray experiment (MIAME)—toward standards for microarray data
A Brazma, P Hingamp, J Quackenbush, G Sherlock, P Spellman, ...
Nature genetics 29 (4), 365-371, 2001
44792001
The PRIDE database and related tools and resources in 2019: improving support for quantification data
Y Perez-Riverol, A Csordas, J Bai, M Bernal-Llinares, S Hewapathirana, ...
Nucleic acids research 47 (D1), D442-D450, 2019
20182019
International network of cancer genome projects
International Cancer Genome Consortium
Nature 464 (7291), 993, 2010
17142010
Transcriptome and genome sequencing uncovers functional variation in humans
T Lappalainen, M Sammeth, MR Friedlšnder, P Ac‘t Hoen, J Monlong, ...
Nature 501 (7468), 506-511, 2013
14802013
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
S Durinck, Y Moreau, A Kasprzyk, S Davis, B De Moor, A Brazma, ...
Bioinformatics 21 (16), 3439-3440, 2005
12082005
ArrayExpress—a public repository for microarray gene expression data at the EBI
A Brazma, H Parkinson, U Sarkans, M Shojatalab, J Vilo, ...
Nucleic acids research 31 (1), 68-71, 2003
10012003
Gene expression data analysis
A Brazma, J Vilo
FEBS letters 480 (1), 17-24, 2000
8162000
Global transcriptional responses of fission yeast to environmental stress
D Chen, WM Toone, J Mata, R Lyne, G Burns, K Kivinen, A Brazma, ...
Molecular biology of the cell 14 (1), 214-229, 2003
8032003
SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues
CGK Ziegler, SJ Allon, SK Nyquist, IM Mbano, VN Miao, CN Tzouanas, ...
Cell 181 (5), 1016-1035. e19, 2020
7092020
The HUPO PSI's molecular interaction format—a community standard for the representation of protein interaction data
H Hermjakob, L Montecchi-Palazzi, G Bader, J Wojcik, L Salwinski, ...
Nature biotechnology 22 (2), 177-183, 2004
6972004
ArrayExpress update—simplifying data submissions
N Kolesnikov, E Hastings, M Keays, O Melnichuk, YA Tang, E Williams, ...
Nucleic acids research 43 (D1), D1113-D1116, 2015
6702015
ArrayExpress—a public database of microarray experiments and gene expression profiles
H Parkinson, M Kapushesky, M Shojatalab, N Abeygunawardena, ...
Nucleic acids research 35 (suppl_1), D747-D750, 2007
6442007
Periodic gene expression program of the fission yeast cell cycle
G Rustici, J Mata, K Kivinen, P Liů, CJ Penkett, G Burns, J Hayles, ...
Nature genetics 36 (8), 809-817, 2004
5652004
Design and implementation of microarray gene expression markup language (MAGE-ML)
PT Spellman, M Miller, J Stewart, C Troup, U Sarkans, S Chervitz, ...
Genome biology 3 (9), 1-9, 2002
5572002
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project
CF Taylor, D Field, SA Sansone, J Aerts, R Apweiler, M Ashburner, ...
Nature biotechnology 26 (8), 889-896, 2008
5362008
ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression
H Parkinson, M Kapushesky, N Kolesnikov, G Rustici, M Shojatalab, ...
Nucleic acids research 37 (suppl_1), D868-D872, 2009
4862009
Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants
R Petryszak, M Keays, YA Tang, NA Fonseca, E Barrera, T Burdett, ...
Nucleic acids research 44 (D1), D746-D752, 2016
4852016
Predicting gene regulatory elements in silico on a genomic scale
A Brāzma, I Jonassen, J Vilo, E Ukkonen
Genome research 8 (11), 1202-1215, 1998
4621998
Approaches to the automatic discovery of patterns in biosequences
A Brazma, I Jonassen, I Eidhammer, D Gilbert
Journal of computational biology 5 (2), 279-305, 1998
4441998
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Articles 1–20