Harriet Dashnow

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Alicia OshlackPeter MacCallum Cancer CentreVerified email at petermac.org
B PopeThe University of MelbourneVerified email at unimelb.edu.au
Andrew LonsdaleThe University of MelbourneVerified email at student.unimelb.edu.au
Justin ZobelComputing and Information Systems, University of MelbourneVerified email at unimelb.edu.au
Kathryn HoltLSHTM & Monash UniversityVerified email at lshtm.ac.uk
Michael InouyeProfessor of Systems Genomics & Population Health, University of Cambridge; Baker InstituteVerified email at medschl.cam.ac.uk
Belinda PhipsonLaboratory Head, The Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Zornitza StarkVictorian Clinical Genetics Services; Australian GenomicsVerified email at vcgs.org.au
Aaron QuinlanProfessor of Human Genetics, U. of Utah; https://github.com/arq5x/vitae/raw/master/quinlan.cv.pdfVerified email at genetics.utah.edu
Nigel LAINGNeurogenetics, University of Western Australia, Harry Perkins Institute of Medical ResearchVerified email at uwa.edu.au
Natalie ThorneThe Walter and Eliza Hall Institute of Medical Research and The University of Melbourne, AustraliaVerified email at wehi.edu.au
Andrew LonieDirector, Australian Bioinformatics Commons, University of MelbourneVerified email at unimelb.edu.au
Daniel G MacArthurGarvan Institute of Medical Research, Murdoch Children's Research InstituteVerified email at atgu.mgh.harvard.edu
Monkol LekYale University School of MedicineVerified email at yale.edu
Melanie BahloTheme Leader, Healthy Development and Ageing, The Walter and Eliza Hall Institute ofVerified email at wehi.edu.au
Philip E. BourneUniversity of VirginiaVerified email at virginia.edu
Stéfan van der WaltUniversity of California, BerkeleyVerified email at berkeley.edu
Yousef Kowsaramazon.comVerified email at amazon.com
Mark B Schultz
Lesley-Ann GrayAustralian Genome Research Facility (AGRF)Verified email at agrf.org.au

Harriet Dashnow

University of Utah

Verified email at genetics.utah.edu - Homepage

Bioinformatics Genetics


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SRST2: Rapid genomic surveillance for public health and hospital microbiology labs M Inouye, H Dashnow, LA Raven, MB Schultz, BJ Pope, T Tomita, J Zobel, ... Genome medicine 6 (11), 1-16, 2014	960	2014
STRetch: detecting and discovering pathogenic short tandem repeat expansions H Dashnow, M Lek, B Phipson, A Halman, S Sadedin, A Lonsdale, ... Genome biology 19 (1), 1-13, 2018	127	2018
Cpipe: a shared variant detection pipeline designed for diagnostic settings SP Sadedin, H Dashnow, PA James, M Bahlo, DC Bauer, A Lonie, ... Genome medicine 7, 1-10, 2015	92	2015
Effective variant filtering and expected candidate variant yield in studies of rare human disease BS Pedersen, JM Brown, H Dashnow, AD Wallace, M Velinder, ... NPJ Genomic Medicine 6 (1), 60, 2021	49	2021
A clinically driven variant prioritization framework outperforms purely computational approaches for the diagnostic analysis of singleton WES data Z Stark, H Dashnow, S Lunke, TY Tan, A Yeung, S Sadedin, N Thorne, ... European Journal of Human Genetics 25 (11), 1268-1272, 2017	25	2017
Ten simple rules for writing a PLOS ten simple rules article H Dashnow, A Lonsdale, PE Bourne PLoS Computational Biology 10 (10), e1003858, 2014	24	2014
Elegant SciPy: The Art of Scientific Python J Nunez-Iglesias, S Van der Walt, H Dashnow " O'Reilly Media, Inc.", 2017	23	2017
Bionitio: demonstrating and facilitating best practices for bioinformatics command-line software. GigaScience 8, giz109 (Sept. 2019) P Georgeson, A Syme, C Sloggett, J Chung, H Dashnow, M Milton, ...	15*	2019
STRling: a k-mer counting approach that detects short tandem repeat expansions at known and novel loci H Dashnow, BS Pedersen, L Hiatt, J Brown, SJ Beecroft, G Ravenscroft, ... Genome Biology 23 (1), 1-20, 2022	12	2022
Ten simple rules for a bioinformatics journal club A Lonsdale, J Sietsma Penington, T Rice, M Walker, H Dashnow PLoS Computational Biology 12 (1), e1004526, 2016	10	2016
Genotyping microsatellites in next-generation sequencing data H Dashnow, S Tan, D Das, S Easteal, A Oshlack Bmc Bioinformatics 16 (2), 1-2, 2015	10	2015
Development of transgenic mice containing an introduced stop codon on the human methylmalonyl-CoA mutase locus NE Buck, H Dashnow, JJ Pitt, LR Wood, HL Peters Public Library of Science 7 (9), e44974, 2012	9	2012
Chronic Lactation Insufficiency Is a Public Health Issue: Commentary on “We Need Patient-Centered Research in Breastfeeding Medicine” by Stuebe. Breastfeed Med 2021; 16: 349–350. H Shere, L Weijer, H Dashnow, LE Moreno, S Foxworthy Scott, H Baker Breastfeeding Medicine 16 (12), 933-934, 2021	6	2021
Resolving the unsolved: Comprehensive assessment of tandem repeats at scale E Dolzhenko, A English, H Dashnow, G De Sena Brandine, T Mokveld, ... bioRxiv, 2023.05. 12.540470, 2023	4	2023
Pooled-parent exome sequencing to prioritise de novo variants in genetic disease H Dashnow, KM Bell, Z Stark, TY Tan, SM White, A Oshlack bioRxiv, 601740, 2019	3	2019
1: RNA-Seq reads to counts M Doyle, B Phipson, H Dashnow Galaxy Training Network, 2019	3*	2019
RNA-seq analysis in R B Phipson, A Trigos, M Ritchie, S Su, M Doyle, H Dashnow, C Law Differential Expression Analysis, 2016	2	2016
2: RNA-seq counts to genes M Doyle, B Phipson, J Maksimovic, A Trigos, M Ritchie, H Dashnow, S Su, ... Galaxy Training Network, 2019	1*	2019
Data Interlocking: Coupling analytics to the data Y Kowsar, H Dashnow, A Lonie 2014 IEEE/ACM 7th International Conference on Utility and Cloud Computing …, 2014	1	2014
P445: Short tandem repeat expansions in the diagnosis of rare Mendelian diseases by whole genome sequencing H Dashnow, B Pedersen, L Hiatt, A Quinlan Genetics in Medicine Open 1 (1), 2023		2023

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