lncRNAdb: a reference database for long noncoding RNAs PP Amaral, MB Clark, DK Gascoigne, ME Dinger, JS Mattick Nucleic acids research 39 (suppl_1), D146-D151, 2011 | 654 | 2011 |
Genome-wide analysis of long noncoding RNA stability MB Clark, RL Johnston, M Inostroza-Ponta, AH Fox, E Fortini, P Moscato, ... Genome research 22 (5), 885-898, 2012 | 651 | 2012 |
lncRNAdb v2. 0: expanding the reference database for functional long noncoding RNAs XC Quek, DW Thomson, JLV Maag, N Bartonicek, B Signal, MB Clark, ... Nucleic acids research 43 (D1), D168-D173, 2015 | 565 | 2015 |
The reality of pervasive transcription MB Clark, PP Amaral, FJ Schlesinger, ME Dinger, RJ Taft, JL Rinn, ... PLoS Biol 9 (7), e1000625, 2011 | 509 | 2011 |
Long noncoding RNAs in cell biology MB Clark, JS Mattick Seminars in cell & developmental biology 22 (4), 366-376, 2011 | 408 | 2011 |
SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer ME Askarian-Amiri, J Crawford, JD French, CE Smart, MA Smith, MB Clark, ... Rna 17 (5), 878-891, 2011 | 384 | 2011 |
Genome-wide discovery of human splicing branchpoints TR Mercer, MB Clark, SB Andersen, ME Brunck, W Haerty, J Crawford, ... Genome research 25 (2), 290-303, 2015 | 248 | 2015 |
RNAcentral: a comprehensive database of non-coding RNA sequences RNAcentral Consortium Nucleic acids research 45 (Database issue), D128, 2017 | 196 | 2017 |
Targeted sequencing for gene discovery and quantification using RNA CaptureSeq TR Mercer, MB Clark, J Crawford, ME Brunck, DJ Gerhardt, RJ Taft, ... Nature protocols 9 (5), 989-1009, 2014 | 192 | 2014 |
Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing MB Clark, TR Mercer, G Bussotti, T Leonardi, KR Haynes, J Crawford, ... Nature methods 12 (4), 339-342, 2015 | 178 | 2015 |
DNase I–hypersensitive exons colocalize with promoters and distal regulatory elements TR Mercer, SL Edwards, MB Clark, SJ Neph, H Wang, AB Stergachis, ... Nature genetics 45 (8), 852-859, 2013 | 151 | 2013 |
Universal alternative splicing of noncoding exons IW Deveson, ME Brunck, J Blackburn, E Tseng, T Hon, TA Clark, MB Clark, ... Cell systems 6 (2), 245-255. e5, 2018 | 138 | 2018 |
Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing L Tian, JS Jabbari, R Thijssen, Q Gouil, SL Amarasinghe, O Voogd, ... Genome Biology 22 (1), 1-24, 2021 | 134 | 2021 |
Long-read sequencing reveals the complex splicing profile of the psychiatric risk gene CACNA1C in human brain MB Clark, T Wrzesinski, AB Garcia, NAL Hall, JE Kleinman, T Hyde, ... Molecular psychiatry, 2019 | 132 | 2019 |
Mammalian gene PEG10 expresses two reading frames by high efficiency–1 frameshifting in embryonic-associated tissues MB Clark, M Jänicke, U Gottesbühren, T Kleffmann, M Legge, ES Poole, ... Journal of Biological Chemistry 282 (52), 37359-37369, 2007 | 118 | 2007 |
RNAcentral: an international database of ncRNA sequences RNAcentral Consortium Nucleic acids research 43 (Database issue), D123, 2015 | 115 | 2015 |
The dark matter rises: the expanding world of regulatory RNAs MB Clark, A Choudhary, MA Smith, RJ Taft, JS Mattick Essays in biochemistry 54, 1-16, 2013 | 101 | 2013 |
Long noncoding RNAs CUPID1 and CUPID2 mediate breast cancer risk at 11q13 by modulating the response to DNA damage JA Betts, MM Marjaneh, F Al-Ejeh, YC Lim, W Shi, H Sivakumaran, ... The American Journal of Human Genetics 101 (2), 255-266, 2017 | 92 | 2017 |
Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes DK Gascoigne, SW Cheetham, PB Cattenoz, MB Clark, PP Amaral, ... Bioinformatics 28 (23), 3042-3050, 2012 | 91 | 2012 |
Accurate expression quantification from nanopore direct RNA sequencing with NanoCount J Gleeson, A Leger, YDJ Prawer, TA Lane, PJ Harrison, W Haerty, ... Nucleic acids research 50 (4), e19-e19, 2022 | 66 | 2022 |