Nicola De Maio
Nicola De Maio
Scientist in Molecular Evolution, European Bioinformatic Institute (EMBL-EBI), Cambridge
Verified email at ebi.ac.uk - Homepage
TitleCited byYear
PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals
R Kofler, P Orozco-terWengel, N De Maio, RV Pandey, V Nolte, A Futschik, ...
PloS one 6 (1), e15925, 2011
3042011
Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131
N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ...
MBio 7 (2), e02162-15, 2016
1022016
New routes to phylogeography: a Bayesian structured coalescent approximation
N De Maio, CH Wu, KM O’Reilly, D Wilson
PLoS genetics 11 (8), e1005421, 2015
832015
VARIATION IN THERMAL PERFORMANCE AND REACTION NORMS AMONG POPULATIONS OF DROSOPHILA MELANOGASTER
P Klepsatel, M Gáliková, N De Maio, CD Huber, C Schlötterer, T Flatt
Evolution 67 (12), 3573-3587, 2013
482013
Linking great apes genome evolution across time scales using polymorphism-aware phylogenetic models
N De Maio, C Schlötterer, C Kosiol
Molecular biology and evolution 30 (10), 2249-2262, 2013
462013
Reproductive and post‐reproductive life history of wild‐caught Drosophila melanogaster under laboratory conditions
P Klepsatel, M Gáliková, N De Maio, S Ricci, C Schlötterer, T Flatt
Journal of Evolutionary Biology 26 (7), 1508-1520, 2013
442013
PoMo: an allele frequency-based approach for species tree estimation
N De Maio, D Schrempf, C Kosiol
Systematic biology 64 (6), 1018-1031, 2015
372015
SCOTTI: efficient reconstruction of transmission within outbreaks with the structured coalescent
N De Maio, CH Wu, DJ Wilson
PLoS computational biology 12 (9), e1005130, 2016
342016
Modernizing Medical Microbiology Informatics Group (MMMIG). 2016
N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ...
Evolutionary history of the global emergence of the Escherichia coli …, 0
27
Reversible polymorphism-aware phylogenetic models and their application to tree inference
D Schrempf, BQ Minh, N De Maio, A von Haeseler, C Kosiol
Journal of theoretical biology 407, 362-370, 2016
222016
Estimating empirical codon hidden Markov models
N De Maio, I Holmes, C Schlötterer, C Kosiol
Molecular biology and evolution 30 (3), 725-736, 2012
172012
Covert dissemination of carbapenemase-producing Klebsiella pneumoniae (KPC) in a successfully controlled outbreak: long-and short-read whole-genome sequencing demonstrate …
J Martin, HTT Phan, J Findlay, N Stoesser, L Pankhurst, I Navickaite, ...
Journal of Antimicrobial Chemotherapy 72 (11), 3025-3034, 2017
152017
Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination
RJ Mostowy, NJ Croucher, N De Maio, C Chewapreecha, SJ Salter, ...
Molecular biology and evolution 34 (10), 2537-2554, 2017
152017
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchęne, M Fourment, ...
PLoS computational biology 15 (4), e1006650, 2019
142019
SimBac: simulation of whole bacterial genomes with homologous recombination
T Brown, X Didelot, DJ Wilson, N De Maio
Microbial genomics 2 (1), 2016
132016
The bacterial sequential Markov coalescent
N De Maio, DJ Wilson
Genetics 206 (1), 333-343, 2017
102017
Community-like genome in single cells of the sulfur bacterium Achromatium oxaliferum
D Ionescu, M Bizic-Ionescu, N De Maio, H Cypionka, HP Grossart
Nature communications 8 (1), 455, 2017
82017
Schl€ otterer C. 2011. PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals
R Kofler, P Orozco-terWengel, N De Maio, RV Pandey, V Nolte, A Futschik, ...
PLoS One 6, e15925, 0
8
Two Distinct Patterns of Clostridium difficile Diversity Across Europe Indicating Contrasting Routes of Spread
DW Eyre, KA Davies, G Davis, WN Fawley, KE Dingle, N De Maio, ...
Clinical Infectious Diseases 67 (7), 1035-1044, 2018
72018
Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131. mBio 7: e02162-15
N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ...
62016
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Articles 1–20