|An integrated encyclopedia of DNA elements in the human genome|
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
|Architecture of the human regulatory network derived from ENCODE data|
MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ...
Nature 489 (7414), 91-100, 2012
|Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus|
W Yang, N Shen, DQ Ye, Q Liu, Y Zhang, XX Qian, N Hirankarn, D Ying, ...
PLoS Genet 6 (2), e1000841, 2010
|AlleleSeq: analysis of allele‐specific expression and binding in a network framework|
J Rozowsky, A Abyzov, J Wang, P Alves, D Raha, A Harmanci, J Leng, ...
Molecular systems biology 7 (1), 522, 2011
|Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors|
KY Yip, C Cheng, N Bhardwaj, JB Brown, J Leng, A Kundaje, J Rozowsky, ...
Genome biology 13 (9), 1-22, 2012
|Diverse roles and interactions of the SWI/SNF chromatin remodeling complex revealed using global approaches|
GM Euskirchen, RK Auerbach, E Davidov, TA Gianoulis, G Zhong, ...
PLoS Genet 7 (3), e1002008, 2011
|Correlation between gene expression profiles and protein–protein interactions within and across genomes|
N Bhardwaj, H Lu
Bioinformatics 21 (11), 2730-2738, 2005
|Kernel-based machine learning protocol for predicting DNA-binding proteins|
N Bhardwaj, RE Langlois, G Zhao, H Lu
Nucleic Acids Research 33 (20), 6486-6493, 2005
|96 weeks treatment of tenofovir alafenamide vs. tenofovir disoproxil fumarate for hepatitis B virus infection|
K Agarwal, M Brunetto, WK Seto, YS Lim, S Fung, P Marcellin, SH Ahn, ...
Journal of hepatology 68 (4), 672-681, 2018
|Getting started in gene orthology and functional analysis|
G Fang, N Bhardwaj, R Robilotto, MB Gerstein
PLoS Comput Biol 6 (3), e1000703, 2010
|Global epidemiology of HCV subtypes and resistance-associated substitutions evaluated by sequencing-based subtype analyses|
TM Welzel, N Bhardwaj, C Hedskog, K Chodavarapu, G Camus, ...
Journal of hepatology 67 (2), 224-236, 2017
|Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data|
C Cheng, KK Yan, W Hwang, J Qian, N Bhardwaj, J Rozowsky, ZJ Lu, ...
PLoS Comput Biol 7 (11), e1002190, 2011
|Measuring the evolutionary rewiring of biological networks|
C Shou, N Bhardwaj, HYK Lam, KK Yan, PM Kim, M Snyder, MB Gerstein
PLoS Comput Biol 7 (1), e1001050, 2011
|The relationship between the evolution of microRNA targets and the length of their UTRs|
C Cheng, N Bhardwaj, M Gerstein
BMC genomics 10 (1), 1-6, 2009
|Comparing genomes to computer operating systems in terms of the topology and evolution of their regulatory control networks|
KK Yan, G Fang, N Bhardwaj, RP Alexander, M Gerstein
Proceedings of the National Academy of Sciences 107 (20), 9186-9191, 2010
|Differential roles of phosphatidylserine, PtdIns (4, 5) P2, and PtdIns (3, 4, 5) P3 in plasma membrane targeting of C2 domains: molecular dynamics simulation, membrane binding …|
D Manna, N Bhardwaj, MS Vora, RV Stahelin, H Lu, W Cho
Journal of Biological Chemistry 283 (38), 26047-26058, 2008
|Analysis of diverse regulatory networks in a hierarchical context shows consistent tendencies for collaboration in the middle levels|
N Bhardwaj, KK Yan, MB Gerstein
Proceedings of the National Academy of Sciences 107 (15), 6841-6846, 2010
|Rewiring of transcriptional regulatory networks: hierarchy, rather than connectivity, better reflects the importance of regulators|
N Bhardwaj, PM Kim, MB Gerstein
Science signaling 3 (146), ra79-ra79, 2010
|Residue-level prediction of DNA-binding sites and its application on DNA-binding protein predictions|
N Bhardwaj, H Lu
FEBS letters 581 (5), 1058-1066, 2007
|Molecular basis of the potent membrane-remodeling activity of the epsin 1 N-terminal homology domain|
Y Yoon, J Tong, PJ Lee, A Albanese, N Bhardwaj, M Källberg, ...
Journal of Biological Chemistry 285 (1), 531-540, 2010