Dr. Nitin Bhardwaj
Dr. Nitin Bhardwaj
Associate Professor and Assistant Dean,Department of Mathematics, Lovely Professional University
Verified email at lpu.co.in
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
114862012
Architecture of the human regulatory network derived from ENCODE data
MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ...
Nature 489 (7414), 91-100, 2012
13772012
Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus
W Yang, N Shen, DQ Ye, Q Liu, Y Zhang, XX Qian, N Hirankarn, D Ying, ...
PLoS Genet 6 (2), e1000841, 2010
3932010
AlleleSeq: analysis of allele‐specific expression and binding in a network framework
J Rozowsky, A Abyzov, J Wang, P Alves, D Raha, A Harmanci, J Leng, ...
Molecular systems biology 7 (1), 522, 2011
2862011
Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors
KY Yip, C Cheng, N Bhardwaj, JB Brown, J Leng, A Kundaje, J Rozowsky, ...
Genome biology 13 (9), 1-22, 2012
2592012
Diverse roles and interactions of the SWI/SNF chromatin remodeling complex revealed using global approaches
GM Euskirchen, RK Auerbach, E Davidov, TA Gianoulis, G Zhong, ...
PLoS Genet 7 (3), e1002008, 2011
2212011
Correlation between gene expression profiles and protein–protein interactions within and across genomes
N Bhardwaj, H Lu
Bioinformatics 21 (11), 2730-2738, 2005
2022005
Kernel-based machine learning protocol for predicting DNA-binding proteins
N Bhardwaj, RE Langlois, G Zhao, H Lu
Nucleic Acids Research 33 (20), 6486-6493, 2005
1632005
96 weeks treatment of tenofovir alafenamide vs. tenofovir disoproxil fumarate for hepatitis B virus infection
K Agarwal, M Brunetto, WK Seto, YS Lim, S Fung, P Marcellin, SH Ahn, ...
Journal of hepatology 68 (4), 672-681, 2018
1212018
Getting started in gene orthology and functional analysis
G Fang, N Bhardwaj, R Robilotto, MB Gerstein
PLoS Comput Biol 6 (3), e1000703, 2010
1102010
Global epidemiology of HCV subtypes and resistance-associated substitutions evaluated by sequencing-based subtype analyses
TM Welzel, N Bhardwaj, C Hedskog, K Chodavarapu, G Camus, ...
Journal of hepatology 67 (2), 224-236, 2017
1032017
Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data
C Cheng, KK Yan, W Hwang, J Qian, N Bhardwaj, J Rozowsky, ZJ Lu, ...
PLoS Comput Biol 7 (11), e1002190, 2011
1032011
Measuring the evolutionary rewiring of biological networks
C Shou, N Bhardwaj, HYK Lam, KK Yan, PM Kim, M Snyder, MB Gerstein
PLoS Comput Biol 7 (1), e1001050, 2011
1022011
The relationship between the evolution of microRNA targets and the length of their UTRs
C Cheng, N Bhardwaj, M Gerstein
BMC genomics 10 (1), 1-6, 2009
972009
Comparing genomes to computer operating systems in terms of the topology and evolution of their regulatory control networks
KK Yan, G Fang, N Bhardwaj, RP Alexander, M Gerstein
Proceedings of the National Academy of Sciences 107 (20), 9186-9191, 2010
932010
Differential roles of phosphatidylserine, PtdIns (4, 5) P2, and PtdIns (3, 4, 5) P3 in plasma membrane targeting of C2 domains: molecular dynamics simulation, membrane binding …
D Manna, N Bhardwaj, MS Vora, RV Stahelin, H Lu, W Cho
Journal of Biological Chemistry 283 (38), 26047-26058, 2008
812008
Analysis of diverse regulatory networks in a hierarchical context shows consistent tendencies for collaboration in the middle levels
N Bhardwaj, KK Yan, MB Gerstein
Proceedings of the National Academy of Sciences 107 (15), 6841-6846, 2010
792010
Rewiring of transcriptional regulatory networks: hierarchy, rather than connectivity, better reflects the importance of regulators
N Bhardwaj, PM Kim, MB Gerstein
Science signaling 3 (146), ra79-ra79, 2010
732010
Residue-level prediction of DNA-binding sites and its application on DNA-binding protein predictions
N Bhardwaj, H Lu
FEBS letters 581 (5), 1058-1066, 2007
692007
Molecular basis of the potent membrane-remodeling activity of the epsin 1 N-terminal homology domain
Y Yoon, J Tong, PJ Lee, A Albanese, N Bhardwaj, M Källberg, ...
Journal of Biological Chemistry 285 (1), 531-540, 2010
672010
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