| Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips J Rappsilber, M Mann, Y Ishihama Nature protocols 2 (8), 1896, 2007 | 2643 | 2007 |
| Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics J Rappsilber, Y Ishihama, M Mann Analytical chemistry 75 (3), 663-670, 2003 | 2041 | 2003 |
| Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein Y Ishihama, Y Oda, T Tabata, T Sato, T Nagasu, J Rappsilber, M Mann Molecular & Cellular Proteomics 4 (9), 1265-1272, 2005 | 1970 | 2005 |
| Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis T Umezawa, N Sugiyama, M Mizoguchi, S Hayashi, F Myouga, ... Proceedings of the National Academy of sciences 106 (41), 17588-17593, 2009 | 786 | 2009 |
| Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry E Lasonder, Y Ishihama, JS Andersen, AMW Vermunt, A Pain, ... Nature 419 (6906), 537-542, 2002 | 779 | 2002 |
| Proteome-wide analysis of chaperonin-dependent protein folding in Escherichia coli MJ Kerner, DJ Naylor, Y Ishihama, T Maier, HC Chang, AP Stines, ... Cell 122 (2), 209-220, 2005 | 634 | 2005 |
| Splicing factor SF3b as a target of the antitumor natural product pladienolide Y Kotake, K Sagane, T Owa, Y Mimori-Kiyosue, H Shimizu, M Uesugi, ... Nature chemical biology 3 (9), 570, 2007 | 517 | 2007 |
| The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition EW Deutsch, A Csordas, Z Sun, A Jarnuczak, Y Perez-Riverol, T Ternent, ... Nucleic acids research, gkw936, 2016 | 501 | 2016 |
| Protein abundance profiling of the Escherichia coli cytosol Y Ishihama, T Schmidt, J Rappsilber, M Mann, FU Hartl, MJ Kerner, ... BMC genomics 9 (1), 1-17, 2008 | 481 | 2008 |
| Phosphopeptide enrichment by aliphatic hydroxy acid-modified metal oxide chromatography for nano-LC-MS/MS in proteomics applications N Sugiyama, T Masuda, K Shinoda, A Nakamura, M Tomita, Y Ishihama Molecular & cellular proteomics 6 (6), 1103-1109, 2007 | 451 | 2007 |
| Phase transfer surfactant-aided trypsin digestion for membrane proteome analysis T Masuda, M Tomita, Y Ishihama Journal of proteome research 7 (2), 731-740, 2008 | 413 | 2008 |
| PINK1-mediated phosphorylation of the Parkin ubiquitin-like domain primes mitochondrial translocation of Parkin and regulates mitophagy K Shiba-Fukushima, Y Imai, S Yoshida, Y Ishihama, T Kanao, S Sato, ... Scientific reports 2 (1), 1-8, 2012 | 409 | 2012 |
| Large‐scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis N Sugiyama, H Nakagami, K Mochida, A Daudi, M Tomita, K Shirasu, ... Molecular systems biology 4 (1), 193, 2008 | 387 | 2008 |
| Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants H Nakagami, N Sugiyama, K Mochida, A Daudi, Y Yoshida, T Toyoda, ... Plant physiology 153 (3), 1161-1174, 2010 | 345 | 2010 |
| Microcolumns with self-assembled particle frits for proteomics Y Ishihama, J Rappsilber, JS Andersen, M Mann Journal of chromatography A 979 (1-2), 233-239, 2002 | 319 | 2002 |
| Stable cationic capillary coating with successive multiple ionic polymer layers for capillary electrophoresis H Katayama, Y Ishihama, N Asakawa Analytical chemistry 70 (24), 5272-5277, 1998 | 303 | 1998 |
| Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics T Geiger, JR Wisniewski, J Cox, S Zanivan, M Kruger, Y Ishihama, ... Nature protocols 6 (2), 147-157, 2011 | 293 | 2011 |
| Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana T Umezawa, N Sugiyama, F Takahashi, JC Anderson, Y Ishihama, ... Science signaling 6 (270), rs8-rs8, 2013 | 290 | 2013 |
| Modular stop and go extraction tips with stacked disks for parallel and multidimensional Peptide fractionation in proteomics Y Ishihama, J Rappsilber, M Mann Journal of proteome research 5 (4), 988-994, 2006 | 272 | 2006 |
| Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards Y Ishihama, T Sato, T Tabata, N Miyamoto, K Sagane, T Nagasu, Y Oda Nature biotechnology 23 (5), 617-621, 2005 | 248 | 2005 |
Naoyuki SugiyamaGraduate School of Phermaceutical Sciences, Kyoto UniversityVerified email at pharm.kyoto-u.ac.jp
