Jonathan Keith
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Methods for identifying SNP interactions: a review on variations of Logic Regression, Random Forest and Bayesian logistic regression
CCM Chen, H Schwender, J Keith, R Nunkesser, K Mengersen, ...
IEEE/ACM transactions on computational biology and bioinformatics 8 (6 …, 2011
Searching for convergence in phylogenetic Markov chain Monte Carlo
RG Beiko, JM Keith, TJ Harlow, MA Ragan
Systematic biology 55 (4), 553-565, 2006
A simulated annealing algorithm for finding consensus sequences
JM Keith, P Adams, D Bryant, DP Kroese, KR Mitchelson, DAE Cochran, ...
Bioinformatics 18 (11), 1494-1499, 2002
Sequence alignment by rare event simulation
J Keith, DP Kroese
Proceedings of the Winter Simulation Conference 1, 320-327, 2002
Agent-based models of malaria transmission: a systematic review
NR Smith, JM Trauer, M Gambhir, JS Richards, RJ Maude, JM Keith, ...
Malaria journal 17 (1), 1-16, 2018
Adaptive independence samplers
JM Keith, DP Kroese, GY Sofronov
Statistics and Computing 18 (4), 409-420, 2008
Agent-based Bayesian approach to monitoring the progress of invasive species eradication programs
JM Keith, D Spring
Proceedings of the National Academy of Sciences 110 (33), 13428-13433, 2013
Method for sequence analysis
J Keith, D Bryant, P Adams
US Patent App. 10/673,938, 2004
A generalized Markov sampler
JM Keith, DP Kroese, D Bryant
Methodology and Computing in Applied Probability 6 (1), 29-53, 2004
Unlocking hidden genomic sequence
JM Keith, DAE Cochran, GH Lala, P Adams, D Bryant, KR Mitchelson
Nucleic acids research 32 (3), e35-e35, 2004
Estimating change-points in biological sequences via the cross-entropy method
GE Evans, GY Sofronov, JM Keith, DP Kroese
Annals of Operations Research 189 (1), 155-165, 2011
Segmenting eukaryotic genomes with the generalized Gibbs sampler
JM Keith
Journal of Computational Biology 13 (7), 1369-1383, 2006
Linking species richness and size diversity in birds and fishes
JDL Yen, JR Thomson, JM Keith, DM Paganin, E Fleishman, AF Bennett, ...
Ecography 41 (12), 1979-1991, 2018
Parallel cross-entropy optimization
GE Evans, JM Keith, DP Kroese
2007 Winter Simulation Conference, 2196-2202, 2007
Function regression in ecology and evolution: FREE
JDL Yen, JR Thomson, DM Paganin, JM Keith, R Mac Nally
Methods in Ecology and Evolution 6 (1), 17-26, 2015
Bayesian inference in estimation of distribution algorithms
M Gallagher, I Wood, J Keith, G Sofronov
2007 IEEE Congress on Evolutionary Computation, 127-133, 2007
Bayesian latent trait modeling of migraine symptom data
CCM Chen, JM Keith, DR Nyholt, NG Martin, KL Mengersen
Human genetics 126 (2), 277-288, 2009
Influencing public health policy with data-informed mathematical models of infectious diseases: Recent developments and new challenges
A Alahmadi, S Belet, A Black, D Cromer, JA Flegg, T House, ...
Epidemics 32, 100393, 2020
Identifying change-points in biological sequences via sequential importance sampling
GY Sofronov, GE Evans, JM Keith, DP Kroese
Environmental Modeling & Assessment 14 (5), 577-584, 2009
Delineating slowly and rapidly evolving fractions of the Drosophila genome
JM Keith, P Adams, S Stephen, JS Mattick
Journal of Computational Biology 15 (4), 407-430, 2008
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