John Quackenbush
John Quackenbush
Harvard T.H. Chan School of Public Health, Channing Division of Network Medicine, and Dana-Farber
Verified email at hsph.harvard.edu
Title
Cited by
Cited by
Year
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
Arabidopsis Genome Initiative
nature 408 (6814), 796, 2000
92072000
TM4: a free, open-source system for microarray data management and analysis
AI Saeed, V Sharov, J White, J Li, W Liang, N Bhagabati, J Braisted, ...
Biotechniques 34 (2), 374-378, 2003
46962003
Minimum information about a microarray experiment (MIAME)—toward standards for microarray data
A Brazma, P Hingamp, J Quackenbush, G Sherlock, P Spellman, ...
Nature genetics 29 (4), 365, 2001
44002001
The complete genome sequence of the gastric pathogen Helicobacter pylori
JF Tomb, O White, AR Kerlavage, RA Clayton, GG Sutton, ...
Nature 388 (6642), 539-547, 1997
39291997
The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
science 309 (5740), 1559-1563, 2005
33272005
Microarray data normalization and transformation
J Quackenbush
Nature genetics 32 (4), 496-501, 2002
24302002
Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi
CM Fraser, S Casjens, WM Huang, GG Sutton, R Clayton, R Lathigra, ...
Nature 390 (6660), 580-586, 1997
22511997
Computational analysis of microarray data
J Quackenbush
Nature reviews genetics 2 (6), 418-427, 2001
20122001
Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach
HJWL Aerts, ER Velazquez, RTH Leijenaar, C Parmar, P Grossmann, ...
Nature communications 5 (1), 1-9, 2014
19912014
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
Y Okazaki, M Furuno, T Kasukawa, J Adachi, H Bono, S Kondo, I Nikaido, ...
Nature 420 (6915), 563-573, 2002
18002002
Genesis: cluster analysis of microarray data
A Sturn, J Quackenbush, Z Trajanoski
Bioinformatics 18 (1), 207-208, 2002
17522002
[9] TM4 microarray software suite
AI Saeed, NK Bhagabati, JC Braisted, W Liang, V Sharov, EA Howe, J Li, ...
Methods in enzymology 411, 134-193, 2006
16432006
Corrections: The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus
HP Klenk, RA Clayton, JF Tomb, O White, KE Nelson, KA Ketchum, ...
Nature 394 (6688), 101, 1998
15771998
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets
G Pertea, X Huang, F Liang, V Antonescu, R Sultana, S Karamycheva, ...
Bioinformatics 19 (5), 651-652, 2003
15472003
The molecular portraits of breast tumors are conserved across microarray platforms
Z Hu, C Fan, DS Oh, JS Marron, X He, BF Qaqish, C Livasy, LA Carey, ...
BMC genomics 7 (1), 96, 2006
15342006
A concise guide to cDNA microarray analysis
P Hegde, R Qi, K Abernathy, C Gay, S Dharap, R Gaspard, JE Hughes, ...
Biotechniques 29 (3), 548-562, 2000
13212000
Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors
JI Herschkowitz, K Simin, VJ Weigman, I Mikaelian, J Usary, Z Hu, ...
Genome biology 8 (5), R76, 2007
12562007
A gene map of the human genome
GD Schuler, MS Boguski, EA Stewart, LD Stein, G Gyapay, K Rice, ...
Science 274 (5287), 540-546, 1996
12561996
Multiple-laboratory comparison of microarray platforms
RA Irizarry, D Warren, F Spencer, IF Kim, S Biswal, BC Frank, ...
Nature methods 2 (5), 345-350, 2005
9772005
Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii
JM Carlton, SV Angiuoli, BB Suh, TW Kooij, M Pertea, JC Silva, ...
Nature 419 (6906), 512-519, 2002
8222002
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