| The walnut (Juglans regia) genome sequence reveals diversity in genes coding for the biosynthesis of non‐structural polyphenols PJ Martínez‐García, MW Crepeau, D Puiu, D Gonzalez‐Ibeas, J Whalen, ... The plant journal 87 (5), 507-532, 2016 | 213 | 2016 |
| Sequencing a Juglans regia× J. microcarpa hybrid yields high-quality genome assemblies of parental species T Zhu, L Wang, FM You, JC Rodriguez, KR Deal, L Chen, J Li, ... Horticulture research 6, 2019 | 85 | 2019 |
| High-quality chromosome-scale assembly of the walnut (Juglans regia L.) reference genome A Marrano, M Britton, PA Zaini, AV Zimin, RE Workman, D Puiu, L Bianco, ... Gigascience 9 (5), giaa050, 2020 | 80 | 2020 |
| Genomic Variation Among and Within Six Juglans Species KA Stevens, K Woeste, S Chakraborty, MW Crepeau, CA Leslie, ... G3: Genes, Genomes, Genetics 8 (7), 2153-2165, 2018 | 65 | 2018 |
| Active Site Detection by Spatial Conformity and Electrostatic Analysis—Unravelling a Proteolytic Function in Shrimp Alkaline Phosphatase S Chakraborty, R Minda, L Salaye, SK Bhattacharjee, BJ Rao PloS one 6 (12), e28470, 2011 | 60 | 2011 |
| A measure of the promiscuity of proteins and characteristics of residues in the vicinity of the catalytic site that regulate promiscuity S Chakraborty, BJ Rao PLoS One 7 (2), e32011, 2012 | 55 | 2012 |
| Deep RNA-Seq profile reveals biodiversity, plant–microbe interactions and a large family of NBS-LRR resistance genes in walnut (Juglans regia) tissues S Chakraborty, M Britton, PJ Martínez-García, AM Dandekar Amb Express 6, 1-13, 2016 | 53 | 2016 |
| The Secreted Protease PrtA Controls Cell Growth, Biofilm Formation and Pathogenicity in Xylella fastidiosa H Gouran, H Gillespie, R Nascimento, S Chakraborty, PA Zaini, ... Scientific reports 6 (1), 31098, 2016 | 50 | 2016 |
| Inhibition of a cold-active alkaline phosphatase by imipenem revealed by in silico modeling of metallo-β-lactamase active sites S Chakraborty, B Ásgeirsson, R Minda, L Salaye, JM Frère, BJ Rao FEBS letters 586 (20), 3710-3715, 2012 | 43 | 2012 |
| Metagenome of SARS-Cov2 patients in Shenzhen with travel to Wuhan shows a wide range of species-Lautropia, Cutibacterium, Haemophilus being most abundant-and Campylobacter … S Chakraborty OSF, 2020 | 41 | 2020 |
| Molecular profiling of Pierce’s disease outlines the response circuitry of Vitis vinifera to Xylella fastidiosa infection PA Zaini, R Nascimento, H Gouran, D Cantu, S Chakraborty, M Phu, ... Frontiers in Plant Science 9, 364203, 2018 | 38 | 2018 |
| A Computational Module Assembled from Different Protease Family Motifs Identifies PI PLC from Bacillus cereus as a Putative Prolyl Peptidase with a Serine … A Rendón-Ramírez, M Shukla, M Oda, S Chakraborty, R Minda, ... PLoS One 8 (8), e70923, 2013 | 33 | 2013 |
| An Automated Flow for Directed Evolution Based on Detection of Promiscuous Scaffolds Using Spatial and Electrostatic Properties of Catalytic Residues S Chakraborty PloS one 7 (7), e40408, 2012 | 33 | 2012 |
| YeATS-a tool suite for analyzing RNA-seq derived transcriptome identifies a highly transcribed putative extensin in heartwood/sapwood transition zone in black walnut S Chakraborty, M Britton, J Wegrzyn, T Butterfield, PJ Martínez-García, ... F1000Research 4, 2015 | 30 | 2015 |
| Sars-cov2 enables anaerobic bacteria (Prevotella, et al) to colonize the lungs disrupting homeostasis-symptoms (ARDS, septic shock, blood clots, arterial stroke) finds … S Chakraborty URL osf. io/usztn, 2020 | 28* | 2020 |
| Protein structure quality assessment based on the distance profiles of consecutive backbone cα atoms S Chakraborty, R Venkatramani, BJ Rao, B Asgeirsson, AM Dandekar F1000Research 2, 2013 | 25 | 2013 |
| Promiscuity-based enzyme selection for rational directed evolution experiments S Chakraborty, R Minda, L Salaye, AM Dandekar, SK Bhattacharjee, ... Enzyme engineering: methods and protocols, 205-216, 2013 | 25 | 2013 |
| The plant-based chimeric antimicrobial protein SlP14a-PPC20 protects tomato against bacterial wilt disease caused by Ralstonia solanacearum TP Morais, PA Zaini, S Chakraborty, H Gouran, CP Carvalho, ... Plant science 280, 197-205, 2019 | 22 | 2019 |
| Computational analysis of perturbations in the post-fusion Dengue virus envelope protein highlights known epitopes and conserved residues in the Zika virus S Chakraborty F1000Research 5, 2016 | 22* | 2016 |
| A measure of the broad substrate specificity of enzymes based on ‘duplicate’catalytic residues S Chakraborty, B Asgeirsson, BJ Rao PloS one 7 (11), e49313, 2012 | 22 | 2012 |
