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Huw Alexander Ogilvie
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BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ...
PLoS computational biology 15 (4), e1006650, 2019
28192019
StarBEAST2 brings faster species tree inference and accurate estimates of substitution rates
HA Ogilvie, RR Bouckaert, AJ Drummond
Molecular biology and evolution 34 (8), 2101-2114, 2017
4362017
The peptide-encoding CEP1 gene modulates lateral root and nodule numbers in Medicago truncatula
N Imin, NA Mohd-Radzman, HA Ogilvie, MA Djordjevic
Journal of Experimental Botany 64 (17), 5395-5409, 2013
2072013
Bayesian inference of species networks from multilocus sequence data
C Zhang, HA Ogilvie, AJ Drummond, T Stadler
Molecular biology and evolution 35 (2), 504-517, 2018
1762018
Computational performance and statistical accuracy of* BEAST and comparisons with other methods
HA Ogilvie, J Heled, D Xie, AJ Drummond
Systematic biology 65 (3), 381-396, 2016
1182016
Fungal phytopathogens encode functional homologues of plant rapid alkalinization factor (RALF) peptides
E Thynne, IML Saur, J Simbaqueba, HA Ogilvie, Y Gonzalez‐Cendales, ...
Molecular plant pathology 18 (6), 811-824, 2017
992017
Advances in computational methods for phylogenetic networks in the presence of hybridization
RAL Elworth, HA Ogilvie, J Zhu, L Nakhleh
Bioinformatics and phylogenetics: seminal contributions of Bernard Moret …, 2019
852019
Diversification of the C-TERMINALLY ENCODED PEPTIDE (CEP) gene family in angiosperms, and evolution of plant-family specific CEP genes
HA Ogilvie, N Imin, MA Djordjevic
BMC genomics 15, 1-15, 2014
742014
SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission
N Sapoval, M Mahmoud, MD Jochum, Y Liu, RAL Elworth, Q Wang, ...
Genome research 31 (4), 635-644, 2021
53*2021
CEP–CEPR1 signalling inhibits the sucrose-dependent enhancement of lateral root growth
K Chapman, M Taleski, HA Ogilvie, N Imin, MA Djordjevic
Journal of Experimental Botany 70 (15), 3955-3967, 2019
462019
microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
RP Eyles, PH Williams, SJ Ohms, GF Weiller, HA Ogilvie, MA Djordjevic, ...
Planta 238, 91-105, 2013
362013
Practical aspects of phylogenetic network analysis using PhyloNet
Z Cao, X Liu, HA Ogilvie, Z Yan, L Nakhleh
BioRxiv, 746362, 2019
292019
A divide-and-conquer method for scalable phylogenetic network inference from multilocus data
J Zhu, X Liu, HA Ogilvie, LK Nakhleh
Bioinformatics 35 (14), i370-i378, 2019
212019
Inferring species trees using integrative models of species evolution
HA Ogilvie, TG Vaughan, NJ Matzke, GJ Slater, T Stadler, D Welch, ...
bioRxiv, 242875, 2018
19*2018
Joint inference of species histories and gene flow
NF Müller, HA Ogilvie, C Zhang, MC Fontaine, JE Amaya-Romero, ...
bioRxiv, 348391, 2021
172021
Unifying gene duplication, loss, and coalescence on phylogenetic networks
P Du, HA Ogilvie, L Nakhleh
International Symposium on Bioinformatics Research and Applications, 40-51, 2019
142019
Validation and description of two new north-western Australian Rainbow skinks with multispecies coalescent methods and morphology
ACA Silva, N Santos, HA Ogilvie, C Moritz
PeerJ 5, e3724, 2017
142017
Maximum parsimony inference of phylogenetic networks in the presence of polyploid complexes
Z Yan, Z Cao, Y Liu, HA Ogilvie, L Nakhleh
Systematic Biology 71 (3), 706-720, 2022
122022
Phylogenomic assessment of the role of hybridization and introgression in trait evolution
Y Wang, Z Cao, HA Ogilvie, L Nakhleh
PLoS genetics 17 (8), e1009701, 2021
102021
Phylovar: toward scalable phylogeny-aware inference of single-nucleotide variations from single-cell DNA sequencing data
M Edrisi, MV Valecha, SBV Chowdary, S Robledo, HA Ogilvie, D Posada, ...
Bioinformatics 38 (Supplement_1), i195-i202, 2022
62022
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