Identity-by-descent analyses for measuring population dynamics and selection in recombining pathogens L Henden, S Lee, I Mueller, A Barry, M Bahlo PLoS genetics 14 (5), e1007279, 2018 | 90 | 2018 |
Plyranges: a grammar of genomic data transformation S Lee, D Cook, M Lawrence Genome biology 20, 1-10, 2019 | 80 | 2019 |
Structurally conserved erythrocyte-binding domain in Plasmodium provides a versatile scaffold for alternate receptor engagement J Gruszczyk, NTY Lim, A Arnott, WQ He, W Nguitragool, W Roobsoong, ... Proceedings of the National Academy of Sciences 113 (2), E191-E200, 2016 | 56 | 2016 |
SNP barcodes provide higher resolution than microsatellite markers to measure Plasmodium vivax population genetics AA Fola, E Kattenberg, Z Razook, D Lautu-Gumal, S Lee, S Mehra, ... Malaria Journal 19, 1-15, 2020 | 37 | 2020 |
Covering all your bases: incorporating intron signal from RNA-seq data S Lee, AY Zhang, S Su, AP Ng, AZ Holik, ML Asselin-Labat, ME Ritchie, ... NAR Genomics and Bioinformatics 2 (3), lqaa073, 2020 | 34 | 2020 |
matchRanges: generating null hypothesis genomic ranges via covariate-matched sampling ES Davis, W Mu, S Lee, MG Dozmorov, MI Love, DH Phanstiel Bioinformatics 39 (5), btad197, 2023 | 17 | 2023 |
bootRanges: flexible generation of null sets of genomic ranges for hypothesis testing W Mu, ES Davis, S Lee, MG Dozmorov, DH Phanstiel, MI Love Bioinformatics 39 (5), btad190, 2023 | 10 | 2023 |
Burning sage: Reversing the curse of dimensionality in the visualization of high-dimensional data U Laa, D Cook, S Lee Journal of Computational and Graphical Statistics 31 (1), 40-49, 2022 | 10 | 2022 |
The state‐of‐the‐art on tours for dynamic visualization of high‐dimensional data S Lee, D Cook, N da Silva, U Laa, N Spyrison, E Wang, HS Zhang Wiley Interdisciplinary Reviews: Computational Statistics 14 (4), e1573, 2022 | 8 | 2022 |
CTCF: an R/bioconductor data package of human and mouse CTCF binding sites MG Dozmorov, W Mu, ES Davis, S Lee, TJ Triche Jr, DH Phanstiel, ... Bioinformatics Advances 2 (1), vbac097, 2022 | 7 | 2022 |
Casting multiple shadows: High-dimensional interactive data visualisation with tours and embeddings S Lee, U Laa, D Cook arXiv preprint arXiv:2012.06077, 2020 | 6 | 2020 |
A review of the state-of-the-art on tours for dynamic visualization of high-dimensional data S Lee, D Cook, N da Silva, U Laa, E Wang, N Spyrison, HS Zhang arXiv preprint arXiv:2104.08016, 2021 | 2 | 2021 |
Fluent genomics with plyranges and tximeta S Lee, M Lawrence, MI Love F1000Research 9 (109), 109, 2020 | 2 | 2020 |
Casting multiple shadows: interactive data visualisation with tours and embeddings S Lee, U Laa, D Cook Journal of Data Science, Statistics, and Visualisation 2 (3), 2022 | | 2022 |
Fluent statistical computing interfaces for biological data analysis SA Lee Monash University, 2020 | | 2020 |