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Trang Nguyen
Trang Nguyen
Iowa State University
Verified email at pacificbiosciences.com
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Cited by
Year
Effects of water models on binding affinity: evidence from all-atom simulation of binding of tamiflu to A/H5N1 neuraminidase
TT Nguyen, MH Viet, MS Li
The Scientific World Journal 2014, 2014
642014
A new method for navigating optimal direction for pulling ligand from binding pocket: application to ranking binding affinity by steered molecular dynamics
QV Vuong, TT Nguyen, MS Li
Journal of chemical information and modeling 55 (12), 2731-2738, 2015
562015
Binding of glyco-acridine derivatives to lysozyme leads to inhibition of amyloid fibrillization
QV Vuong, K Siposova, TT Nguyen, A Antosova, L Balogova, L Drajna, ...
Biomacromolecules 14 (4), 1035-1043, 2013
482013
Study of Tamiflu sensitivity to variants of A/H5N1 virus using different force fields
TT Nguyen, BK Mai, MS Li
Journal of chemical information and modeling 51 (9), 2266-2276, 2011
442011
In Silico and in Vitro Study of Binding Affinity of Tripeptides to Amyloid β Fibrils: Implications for Alzheimer’s Disease
MH Viet, K Siposova, Z Bednarikova, A Antosova, TT Nguyen, Z Gazova, ...
The Journal of Physical Chemistry B 119 (16), 5145-5155, 2015
382015
Active site breathing of human Alkbh5 revealed by solution NMR and accelerated molecular dynamics
JA Purslow, TT Nguyen, TK Egner, RR Dotas, B Khatiwada, V Venditti
Biophysical Journal 115 (10), 1895-1905, 2018
232018
The oligomerization state of bacterial enzyme I (EI) determines EI's allosteric stimulation or competitive inhibition by α-ketoglutarate
TT Nguyen, R Ghirlando, V Venditti
Journal of Biological Chemistry 293 (7), 2631-2639, 2018
152018
N6-methyladenosine binding induces a metal-centered rearrangement that activates the human RNA demethylase Alkbh5
JA Purslow, TT Nguyen, B Khatiwada, A Singh, V Venditti
Science Advances 7 (34), eabi8215, 2021
132021
Structure elucidation of the elusive Enzyme I monomer reveals the molecular mechanisms linking oligomerization and enzymatic activity
TT Nguyen, R Ghirlando, J Roche, V Venditti
Proceedings of the National Academy of Sciences 118 (20), e2100298118, 2021
122021
Computational study of glucose-6-phophate-dehydrogenase deficiencies using molecular dynamics simulation
H Nguyen, T Nguyen, L Le
S Asian J Life Sci 4, 32-39, 2016
102016
Solution structure ensemble of human obesity-associated protein FTO reveals druggable surface pockets at the interface between the N-and C-terminal domain
B Khatiwada, TT Nguyen, JA Purslow, V Venditti
Journal of Biological Chemistry 298 (5), 2022
92022
An allosteric pocket for inhibition of bacterial Enzyme I identified by NMR-based fragment screening
TT Nguyen, V Venditti
Journal of structural biology: X 4, 100034, 2020
92020
A Single Point Mutation Controls the Rate of Interconversion Between the g + and g Rotamers of the Histidine 189 χ2 Angle That Activates Bacterial …
JA Purslow, JN Thimmesch, V Sivo, TT Nguyen, B Khatiwada, RR Dotas, ...
Frontiers in Molecular Biosciences 8, 699203, 2021
32021
A Single Point Mutation Controls the Rate g+ and of g− Interconversion Rotamers of the Between Histidine the 189 χ2 Angle That Activates Bacterial Enzyme I for Catalysis
JA Purslow, JN Thimmesch, V Sivo, TT Nguyen, B Khatiwada, RR Dotas, ...
Structural and Dynamic Aspects of Protein Function and Allostery, 2022
2022
High-Pressure NMR Experiments for Detecting Protein Low-Lying Conformational States
TT Nguyen, S Siang, J Roche
JoVE (Journal of Visualized Experiments), e62701, 2021
2021
A ten-day-old newborn with acute generalized exanthematous pustulosis.
TCC Mai, TTV Vo, TTM Nguyen, TCN Le, TTP Nguyen, TN Pham, ...
European Journal of Pediatric Dermatology 31 (2), 87-90, 2021
2021
Neonato con pustolosi esantematica acuta generalizzata.
TCC Mai, TTV Vo, TTM Nguyen, TCN Le, TTP Nguyen, TN Pham, ...
European Journal of Pediatric Dermatology 31 (2), 87-90, 2021
2021
Hybrid thermophilic/mesophilic enzymes reveal a role for conformational disorder in regulation of bacterial Enzyme I
C Stewart, R Dotas, T Nguyen, R Ghirlando, V Venditti, D Potoyan
2020
PROCEEDINGS-INTERNATIONAL CONFERENCE ON MACHINE LEARNING AND CYBERNETICS
TT Nguyen, H Nguyen, Y Wu, MJ Li, JS Guo, JC Zeng, JX Chen, Q Zou, ...
2015
Tripeptides Screening Report: Proline is Important for Aβ Fibrils Depolymerization
K Siposova, MH Viet, MS Li, Z Bednarikova, A Antosova, TT Nguyen, ...
Biophysical Journal 106 (2), 55a-56a, 2014
2014
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Articles 1–20