Tobias Müller

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Matthias WolfAcademic Director, Department of Bioinformatics, University of WürzburgVerified email at biozentrum.uni-wuerzburg.de
Gunnar W. KlauHeinrich Heine University DüsseldorfVerified email at hhu.de
Martin VingronMax-Planck-Institut für molekulare GenetikVerified email at molgen.mpg.de
Frank FörsterBioinformatics Core Facility of the University of GiessenVerified email at computational.bio.uni-giessen.de
Sven RahmannSaarland UniversityVerified email at cs.uni-saarland.de
Julia C EngelmannSenior scientist at NIOZ Royal Netherlands Institute for Sea ResearchVerified email at nioz.nl
Alexander KellerProfessor of Cellular and Organismic Networks, Faculty of Biology, LMU MunichVerified email at bio.lmu.de
Roland F SchwarzInstitute for Computational Cancer Biology, University Hospital and University of Cologne, GermanyVerified email at uk-koeln.de
Daniel GerlachBoehringer Ingelheim, Vienna, AustriaVerified email at boehringer-ingelheim.com
Prof. Dr. Ralph O. SchillUniversity of Stuttgart, Institute of Biomaterials and biomolecular Systems, Department of ZoologyVerified email at bio.uni-stuttgart.de
Martin MuellerPharmaceutical Biology, University WuerzburgVerified email at biozentrum.uni-wuerzburg.de
Rainer SpangUniversity of RegensburgVerified email at ur.de
Thomas HacklGroningen Institute for Evolutionary Life SciencesVerified email at rug.nl
Lodewyk WesselsProfessor of Computational Cancer BiologyVerified email at nki.nl
Alexander V. ShkumatovVUB-VIBVerified email at vub.be
Benjamin MergetComputational Chemist at BASFVerified email at basf.com
Markus J. AnkenbrandBioMedical Data Science, Center for Computational and Theoretical Biology, University of WürzburgVerified email at uni-wuerzburg.de
Robert GeffersHelmholtz Centre for Infection Research (HZI)Verified email at helmholtz-hzi.de
Sandra Kittelmann SeedorfWilmar International Ltd, SingaporeVerified email at sg.wilmar-intl.com
Peter H. JanssenAgResearch, Grasslands Research Centre, Palmerston North, New ZealandVerified email at agresearch.co.nz

Tobias Müller

Bioinformatics Department, University of Würzburg

Verified email at biozentrum.uni-wuerzburg.de

Bioinformatics Computer Science Statistics Quantitative Biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Identifying functional modules in protein–protein interaction networks: an integrated exact approach MT Dittrich, GW Klau, A Rosenwald, T Dandekar, T Müller Bioinformatics 24 (13), i223-i231, 2008	611	2008
5.8 S-28S rRNA interaction and HMM-based ITS2 annotation A Keller, T Schleicher, J Schultz, T Müller, T Dandekar, M Wolf Gene 430 (1-2), 50-57, 2009	575	2009
4SALE–a tool for synchronous RNA sequence and secondary structure alignment and editing PN Seibel, T Müller, T Dandekar, J Schultz, M Wolf BMC bioinformatics 7, 1-7, 2006	455	2006
A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota J SCHULTZ, S MAISEL, D GERLACH, T MÜLLER, M WOLF RNA 11 (4), 361-364, 2005	449	2005
Distinguishing species T Müller, N Philippi, T Dandekar, J Schultz, M Wolf RNA 13 (9), 1469-1472, 2007	399	2007
Modeling amino acid replacement T Müller, M Vingron Journal of Computational Biology 7, 761-776, 2000	383	2000
Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE PN Seibel, T Müller, T Dandekar, M Wolf BMC research notes 1, 1-7, 2008	325	2008
The ITS2 Database III—sequences and structures for phylogeny C Koetschan, F Förster, A Keller, T Schleicher, B Ruderisch, R Schwarz, ... Nucleic acids research 38 (suppl_1), D275-D279, 2010	317	2010
Metabolic Programming of MEST DNA Methylation by Intrauterine Exposure to Gestational Diabetes Mellitus N El Hajj, G Pliushch, E Schneider, M Dittrich, T Müller, M Korenkov, ... Diabetes 62, 1320-1328, 2013	314	2013
BioNet: an R-Package for the functional analysis of biological networks D Beisser, GW Klau, T Dandekar, T Müller, MT Dittrich Bioinformatics 26 (8), 1129-1130, 2010	285	2010
Frequency of regulatory T cells determines the outcome of the T-cell-engaging antibody blinatumomab in patients with B-precursor ALL J Duell, M Dittrich, T Bedke, T Mueller, F Eisele, A Rosenwald, L Rasche, ... Leukemia 31 (10), 2181-2190, 2017	252	2017
The internal transcribed spacer 2 database—a web server for (not only) low level phylogenetic analyses J Schultz, T Müller, M Achtziger, PN Seibel, T Dandekar, M Wolf Nucleic acids research 34 (suppl_2), W704-W707, 2006	243	2006
Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis C Schoen, J Blom, H Claus, A Schramm-Glück, P Brandt, T Müller, ... Proceedings of the national academy of sciences 105 (9), 3473-3478, 2008	237	2008
Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structures M Wolf, M Achtziger, J Schultz, T Dandekar, T Müller RNA 11 (11), 1616-1623, 2005	234	2005
Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees A Keller, F Förster, T Müller, T Dandekar, J Schultz, M Wolf Biology Direct 5, 1-12, 2010	198	2010
The ITS2 Database II: homology modelling RNA structure for molecular systematics C Selig, M Wolf, T Müller, T Dandekar, J Schultz Nucleic acids research 36 (suppl_1), D377-D380, 2007	194	2007
Estimating amino acid substitution models: a comparison of Dayhoff's estimator, the resolvent approach and a maximum likelihood method T Müller, R Spang, M Vingron Molecular biology and evolution 19 (1), 8-13, 2002	185	2002
Phylogeny of Firmicutes with special reference to Mycoplasma (Mollicutes) as inferred from phosphoglycerate kinase amino acid sequence data M Wolf, T Müller, T Dandekar, JD Pollack International journal of systematic and evolutionary microbiology 54 (3 …, 2004	164	2004
ProfDistS:(profile-) distance based phylogeny on sequence—structure alignments M Wolf, B Ruderisch, T Dandekar, J Schultz, T Müller Bioinformatics 24 (20), 2401-2402, 2008	162	2008
ITS2 database IV: interactive taxon sampling for internal transcribed spacer 2 based phylogenies C Koetschan, T Hackl, T Müller, M Wolf, F Förster, J Schultz Molecular Phylogenetics and Evolution 63 (3), 585-588, 2012	161	2012

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