Melissa Cline
Melissa Cline
Project Scientist, UC Santa Cruz Genomics Institute
Verified email at soe.ucsc.edu
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57-74, 2012
10876*2012
Integration of biological networks and gene expression data using Cytoscape
MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ...
Nature protocols 2 (10), 2366, 2007
21542007
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
12102014
The UCSC genome browser database: update 2011
PA Fujita, B Rhead, AS Zweig, AS Hinrichs, D Karolchik, MS Cline, ...
Nucleic acids research 39 (suppl_1), D876-D882, 2010
11782010
The UCSC Genome Browser database: extensions and updates 2013
LR Meyer, AS Zweig, AS Hinrichs, D Karolchik, RM Kuhn, M Wong, ...
Nucleic acids research 41 (D1), D64-D69, 2012
7802012
The UCSC genome browser database: 2014 update
D Karolchik, GP Barber, J Casper, H Clawson, MS Cline, M Diekhans, ...
Nucleic acids research 42 (D1), D764-D770, 2014
7072014
NetAffx: Affymetrix probesets and annotations
G Liu, AE Loraine, R Shigeta, M Cline, J Cheng, V Valmeekam, S Sun, ...
Nucleic acids research 31 (1), 82-86, 2003
6092003
The UCSC genome browser database: 2008 update
D Karolchik, RM Kuhn, R Baertsch, GP Barber, H Clawson, M Diekhans, ...
Nucleic acids research 36 (suppl_1), D773-D779, 2007
5742007
Nova regulates brain-specific splicing to shape the synapse
J Ule, A Ule, J Spencer, A Williams, JS Hu, M Cline, H Wang, T Clark, ...
Nature genetics 37 (8), 844-852, 2005
5042005
The UCSC Genome Browser database: extensions and updates 2011
TR Dreszer, D Karolchik, AS Zweig, AS Hinrichs, BJ Raney, RM Kuhn, ...
Nucleic acids research 40 (D1), D918-D923, 2012
3732012
Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy
H Du, MS Cline, RJ Osborne, DL Tuttle, TA Clark, JP Donohue, MP Hall, ...
Nature structural & molecular biology 17 (2), 187, 2010
2972010
An encyclopedia of mouse DNA elements (Mouse ENCODE)
JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, T Gingeras, ...
Genome biology 13 (8), 1-5, 2012
2852012
ENCODE whole-genome data in the UCSC Genome Browser: update 2012
KR Rosenbloom, TR Dreszer, JC Long, VS Malladi, CA Sloan, BJ Raney, ...
Nucleic acids research 40 (D1), D912-D917, 2012
2652012
Muscleblind-like 2-mediated alternative splicing in the developing brain and dysregulation in myotonic dystrophy
K Charizanis, KY Lee, R Batra, M Goodwin, C Zhang, Y Yuan, L Shiue, ...
Neuron 75 (3), 437-450, 2012
2462012
Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry
R Karchin, M Cline, Y Mandel‐Gutfreund, K Karplus
Proteins: Structure, Function, and Bioinformatics 51 (4), 504-514, 2003
2392003
Unusual intron conservation near tissue-regulated exons found by splicing microarrays
CW Sugnet, K Srinivasan, TA Clark, G O'Brien, MS Cline, H Wang, ...
PLoS Comput Biol 2 (1), e4, 2006
2272006
ENCODE whole-genome data in the UCSC genome browser (2011 update)
BJ Raney, MS Cline, KR Rosenbloom, TR Dreszer, K Learned, GP Barber, ...
Nucleic acids research 39 (suppl_1), D871-D875, 2011
2252011
Toil enables reproducible, open source, big biomedical data analyses
J Vivian, AA Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ...
Nature biotechnology 35 (4), 314-316, 2017
2232017
RBPmap: a web server for mapping binding sites of RNA-binding proteins
I Paz, I Kosti, M Ares Jr, M Cline, Y Mandel-Gutfreund
Nucleic acids research 42 (W1), W361-W367, 2014
2232014
Exploring TCGA pan-cancer data at the UCSC cancer genomics browser
MS Cline, B Craft, T Swatloski, M Goldman, S Ma, D Haussler, J Zhu
Scientific reports 3, 2652, 2013
2142013
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Articles 1–20