Kasper D. Hansen
Kasper D. Hansen
Dept. of Biostatistics, Johns Hopkins University
Verified email at jhsph.edu - Homepage
Title
Cited by
Cited by
Year
Orchestrating high-throughput genomic analysis with Bioconductor
W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ...
Nature methods 12 (2), 115, 2015
15402015
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
JH Bullard, E Purdom, KD Hansen, S Dudoit
BMC bioinformatics 11 (1), 94, 2010
14832010
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
MJ Aryee, AE Jaffe, H Corrada-Bravo, C Ladd-Acosta, AP Feinberg, ...
Bioinformatics 30 (10), 1363-1369, 2014
13762014
Increased methylation variation in epigenetic domains across cancer types
KD Hansen, W Timp, HC Bravo, S Sabunciyan, B Langmead, ...
Nature genetics 43 (8), 768, 2011
9182011
Genetic effects on gene expression across human tissues
GTEx Consortium
Nature 550 (7675), 204-213, 2017
9112017
Identification of functional elements and regulatory circuits by Drosophila modENCODE
S Roy, J Ernst, PV Kharchenko, P Kheradpour, N Negre, ML Eaton, ...
Science 330 (6012), 1787-1797, 2010
8152010
Biases in Illumina transcriptome sequencing caused by random hexamer priming
KD Hansen, SE Brenner, S Dudoit
Nucleic acids research 38 (12), e131-e131, 2010
6572010
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
KD Hansen, B Langmead, RA Irizarry
Genome biology 13 (10), R83, 2012
4222012
Removing technical variability in RNA-seq data using conditional quantile normalization
KD Hansen, RA Irizarry, Z Wu
Biostatistics 13 (2), 204-216, 2012
3972012
Cloud-scale RNA-sequencing differential expression analysis with Myrna
B Langmead, KD Hansen, JT Leek
Genome biology 11 (8), R83, 2010
3602010
Functional normalization of 450k methylation array data improves replication in large cancer studies
JP Fortin, A Labbe, M Lemire, BW Zanke, TJ Hudson, EJ Fertig, ...
Genome biology 15 (11), 503, 2014
3332014
Reversible switching between epigenetic states in honeybee behavioral subcastes
BR Herb, F Wolschin, KD Hansen, MJ Aryee, B Langmead, R Irizarry, ...
Nature neuroscience 15 (10), 1371, 2012
2532012
Social environment is associated with gene regulatory variation in the rhesus macaque immune system
J Tung, LB Barreiro, ZP Johnson, KD Hansen, V Michopoulos, D Toufexis, ...
Proceedings of the National Academy of Sciences 109 (17), 6490-6495, 2012
2422012
Conservation of an RNA regulatory map between Drosophila and mammals
AN Brooks, L Yang, MO Duff, KD Hansen, JW Park, S Dudoit, SE Brenner, ...
Genome research 21 (2), 193-202, 2011
2202011
Common DNA methylation alterations in multiple brain regions in autism
C Ladd-Acosta, KD Hansen, E Briem, MD Fallin, WE Kaufmann, ...
Molecular psychiatry 19 (8), 862-871, 2014
2052014
aroma. affymetrix: A generic framework in R for analyzing small to very large Affymetrix data sets in bounded memory
H Bengtsson, K Simpson, J Bullard, K Hansen
tech report 745, 1-9, 2008
1772008
Sequencing technology does not eliminate biological variability
KD Hansen, Z Wu, RA Irizarry, JT Leek
Nature biotechnology 29 (7), 572-573, 2011
1622011
Dynamic landscape and regulation of RNA editing in mammals
MH Tan, Q Li, R Shanmugam, R Piskol, J Kohler, AN Young, KI Liu, ...
Nature 550 (7675), 249-254, 2017
1592017
Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing
MJ Ziller, KD Hansen, A Meissner, MJ Aryee
Nature methods 12 (3), 230, 2015
1522015
Reproducible RNA-seq analysis using recount2
L Collado-Torres, A Nellore, K Kammers, SE Ellis, MA Taub, KD Hansen, ...
Nature biotechnology 35 (4), 319-321, 2017
1462017
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