| Biological network motif detection: principles and practice E Wong, B Baur, S Quader, CH Huang Briefings in bioinformatics 13 (2), 202-215, 2012 | 215 | 2012 |
| Genetic fine‐mapping and identification of candidate genes and variants for adiposity traits in outbred rats GR Keele, JW Prokop, H He, K Holl, J Littrell, A Deal, S Francic, L Cui, ... Obesity 26 (1), 213-222, 2018 | 73 | 2018 |
| A feature selection algorithm to compute gene centric methylation from probe level methylation data B Baur, S Bozdag PloS one 11 (2), e0148977, 2016 | 30 | 2016 |
| The cancer-associated genetic variant Rs3903072 modulates immune cells in the tumor microenvironment Y Zhang, M Manjunath, J Yan, BA Baur, S Zhang, S Roy, JS Song Frontiers in genetics 10, 470802, 2019 | 26 | 2019 |
| A canonical correlation analysis-based dynamic bayesian network prior to infer gene regulatory networks from multiple types of biological data B Baur, S Bozdag Journal of Computational Biology 22 (4), 289-299, 2015 | 24 | 2015 |
| Data integration for inferring context-specific gene regulatory networks B Baur, J Shin, S Zhang, S Roy Current opinion in systems biology 23, 38-46, 2020 | 9 | 2020 |
| Deciphering the role of 3D genome organization in breast cancer susceptibility B Baur, DI Lee, J Haag, D Chasman, M Gould, S Roy Frontiers in Genetics 12, 788318, 2022 | 7 | 2022 |
| On network tools for network motif finding: a survey study EA Wong, B Baur Data Min Bioinform 9, 122-134, 2010 | 7 | 2010 |
| Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory variation B Baur, J Shin, J Schreiber, S Zhang, Y Zhang, M Manjunath, JS Song, ... PLoS computational biology 19 (7), e1011286, 2023 | 5 | 2023 |
| ProcessDriver: A computational pipeline to identify copy number drivers and associated disrupted biological processes in cancer B Baur, S Bozdag Genomics 109 (3-4), 233-240, 2017 | 4 | 2017 |
| Policy Options to Mitigate the Impacts of Green Gentrification When Constructing New Bike Paths in the Madison Area J Davis, B Baur, S Alexander, B Bachmann | 3 | 2021 |
| Rewiring of the 3D genome during acquisition of carboplatin resistance in a triple-negative breast cancer patient-derived xenograft MG Dozmorov, MA Marshall, NS Rashid, JM Grible, A Valentine, AL Olex, ... Scientific Reports 13 (1), 5420, 2023 | 2 | 2023 |
| Improving Bus Route Design Using Stop Balancing and Community-level Data J McKetney, EA Trujillo, M Tabbutt, B Baur | 2 | 2021 |
| Publisher Correction: Rewiring of the 3D genome during acquisition of carboplatin resistance in a triple-negative breast cancer patient-derived xenograft MG Dozmorov, MA Marshall, NS Rashid, JM Grible, A Valentine, AL Olex, ... Scientific Reports 13 (1), 7522, 2023 | 1 | 2023 |
| Predicting patient-specific enhancer-promoter interactions B Baur, S Roy Cell Reports Methods 3 (9), 2023 | | 2023 |
| Benchmarking graph representation learning algorithms for detecting modules in molecular networks Z Song, B Baur, S Roy F1000Research 12, 941, 2023 | | 2023 |
| 22nd IEEE International Workshop on High Performance Computational Biology (HiCOMB 2023) ACMA de Melo, A Kalyanaraman, F Saeed, S Bozdag, Z Ahmed, M Alser, ... | | 2023 |
| Abstract P1-13-23: Carboplatin resistance-associated changes in the 3D chromatin landscape of a triple-negative breast cancer Patient-Derived Xenograft M Dozmorov, M Marshall, N Rashid, J Grible, AD Valentine, A Olex, ... Cancer Research 83 (5_Supplement), P1-13-23-P1-13-23, 2023 | | 2023 |
| Comparison of deep and shallow graph representation learning algorithms for detecting modules in molecular networks Z Song, BA Baur, S Roy 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2022 | | 2022 |
| Lee DI Haag J, Chasman D, Gould M and Roy S (2022) Deciphering the Role of 3D Genome Organization in Breast Cancer Susceptibility B Baur The Role of High-Order Chromatin Organization in Gene Regulation, 2022 | | 2022 |
