Lars Barquist
Lars Barquist
Research Group Leader, Helmholtz Institute for RNA-based Infection Research
Verified email at helmholtz-hiri.de - Homepage
TitleCited byYear
Rfam 11.0: 10 years of RNA families
SW Burge, J Daub, R Eberhardt, J Tate, L Barquist, EP Nawrocki, ...
Nucleic acids research 41 (D1), D226-D232, 2012
6632012
Dual RNA-seq unveils noncoding RNA functions in host–pathogen interactions
AJ Westermann, KU Förstner, F Amman, L Barquist, Y Chao, LN Schulte, ...
Nature 529 (7587), 496, 2016
1832016
Global RNA recognition patterns of post‐transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo
E Holmqvist, PR Wright, L Li, T Bischler, L Barquist, R Reinhardt, ...
The EMBO journal 35 (9), 991-1011, 2016
1292016
Parallel independent evolution of pathogenicity within the genus Yersinia
S Reuter, TR Connor, L Barquist, D Walker, T Feltwell, SR Harris, ...
Proceedings of the National Academy of Sciences 111 (18), 6768-6773, 2014
972014
Patterns of genome evolution that have accompanied host adaptation in Salmonella
GC Langridge, M Fookes, TR Connor, T Feltwell, N Feasey, BN Parsons, ...
Proceedings of the National Academy of Sciences 112 (3), 863-868, 2015
952015
Approaches to querying bacterial genomes with transposon-insertion sequencing
L Barquist, CJ Boinett, AK Cain
RNA biology 10 (7), 1161-1169, 2013
932013
Functional genomics reveals that Clostridium difficile Spo0A coordinates sporulation, virulence and metabolism
LJ Pettit, HP Browne, L Yu, WK Smits, RP Fagan, L Barquist, MJ Martin, ...
BMC genomics 15 (1), 160, 2014
682014
A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium
L Barquist, GC Langridge, DJ Turner, MD Phan, AK Turner, A Bateman, ...
Nucleic acids research 41 (8), 4549-4564, 2013
682013
A High-Resolution View of Genome-Wide Pneumococcal Transformation
NJ Croucher, SR Harris, L Barquist, J Parkhill, SD Bentley
PLoS Pathogens 8 (6), e1002745, 2012
682012
Resolving host–pathogen interactions by dual RNA-seq
AJ Westermann, L Barquist, J Vogel
PLoS pathogens 13 (2), e1006033, 2017
672017
The agr locus regulates virulence and colonization genes in Clostridium difficile 027
MJ Martin, S Clare, D Goulding, A Faulds-Pain, L Barquist, HP Browne, ...
Journal of bacteriology 195 (16), 3672-81, 2013
652013
Accelerating discovery and functional analysis of small RNAs with new technologies
L Barquist, J Vogel
Annual review of genetics 49, 367-394, 2015
622015
High-Throughput Analysis of Gene Essentiality and Sporulation in Clostridium difficile
M Dembek, L Barquist, CJ Boinett, AK Cain, M Mayho, TD Lawley, ...
mBio 6 (2), e02383-14, 2015
572015
Signatures of adaptation in human invasive Salmonella Typhimurium ST313 populations from sub-Saharan Africa
CK Okoro, L Barquist, TR Connor, SR Harris, S Clare, MP Stevens, ...
PLoS neglected tropical diseases 9 (3), e0003611, 2015
572015
Dominant role of nucleotide substitution in the diversification of serotype 3 pneumococci over decades and during a single infection
NJ Croucher, AM Mitchell, KA Gould, D Inverarity, L Barquist, T Feltwell, ...
PLoS genetics 9 (10), e1003868, 2013
542013
RNIE: genome-wide prediction of bacterial intrinsic terminators
PP Gardner, L Barquist, A Bateman, EP Nawrocki, Z Weinberg
Nucleic acids research 39 (14), 5845-5852, 2011
512011
Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings
NA Feasey, J Hadfield, KH Keddy, TJ Dallman, J Jacobs, X Deng, ...
Nature genetics 48 (10), 1211, 2016
482016
The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries
L Barquist, M Mayho, C Cummins, AK Cain, CJ Boinett, AJ Page, ...
Bioinformatics 32 (7), 1109-1111, 2016
402016
Genome and transcriptome adaptation accompanying emergence of the definitive type 2 host-restricted Salmonella enterica serovar Typhimurium pathovar
RA Kingsley, S Kay, T Connor, L Barquist, L Sait, KE Holt, K Sivaraman, ...
mBio 4 (5), e00565-13, 2013
31*2013
Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling
S Lindgreen, SU Umu, ASW Lai, H Eldai, W Liu, S McGimpsey, ...
PLoS computational biology 10 (10), e1003907, 2014
292014
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