hideya kawaji

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	All	Since 2016
Citations	20394	11071
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i10-index	98	92

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Carninci PieroRIKEN IMS (Yokohama, JP) and Human Technopole (Milan, IT)Verified email at postman.riken.jp
Alistair ForrestHead of Systems Biology and Genomics, Harry Perkins Institute of Medical ResearchVerified email at perkins.uwa.edu.au
Timo LassmannTelethon Kids InstituteVerified email at telethonkids.org.au
Carsten O. DaubAssociate Professor, Karolinska InstitutetVerified email at ki.se
harukazu suzukiGroup Director, RIKEN CLSTVerified email at gsc.riken.jp
Shintaro KatayamaDepartment of Biosciences and Nutrition, Karolinska InstitutetVerified email at ki.se
Erik ArnerRIKENVerified email at gsc.riken.jp
Jessica SeverinRIKENVerified email at gsc.riken.jp
Albin SandelinProfessor, The Bioinformatics Centre, Department of Biology & BRIC, Copenhagen UniversityVerified email at binf.ku.dk
Jayson HarshbargerTechnical Scientist at RIKEN Center for Life Science TechnologiesVerified email at gsc.riken.jp
David HumeMater Research Institute-University of QueenslandVerified email at uq.edu.au
Robin AnderssonUniversity of CopenhagenVerified email at binf.ku.dk
Mitsuoki KawanoChugokugakuen UniversityVerified email at cjc.ac.jp
Colin SempleProfessor/Head of Bioinformatics, MRC Human Genetics Unit, University of EdinburghVerified email at igmm.ed.ac.uk
Geoffrey FaulknerQueensland Brain Institute @ Mater Research Institute - University of QueenslandVerified email at mater.uq.edu.au
Hideo MatsudaGraduate School of Information Science and Technology, Osaka UniversityVerified email at ist.osaka-u.ac.jp
Prof. Sean M. GrimmondThe University of Melbourne Centre for Cancer ResearchVerified email at unimelb.edu.au
Kate SchroderLab Head, Institute for Molecular Bioscience, University of QLDVerified email at imb.uq.edu.au
Kenneth BaillieSenior Clinical Fellow, Roslin Institute, University of EdinburghVerified email at ed.ac.uk
Piotr J BalwierzPostdoctoral Researcher, Imperial College LondonVerified email at imperial.ac.uk

hideya kawaji

RIKEN PMI

Verified email at gsc.riken.jp

transcriptome transcription starting site small RNA RNAome biomarker


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005	3469	2005
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs Y Okazaki, M Furuno, T Kasukawa, J Adachi, H Bono, S Kondo, I Nikaido, ... Nature 420 (6915), 563-573, 2002	1889	2002
An atlas of active enhancers across human cell types and tissues R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ... Nature 507 (7493), 455-461, 2014	1701	2014
Genome-wide analysis of mammalian promoter architecture and evolution P Carninci, A Sandelin, B Lenhard, S Katayama, K Shimokawa, ... Nature genetics 38 (6), 626-635, 2006	1345	2006
A promoter-level mammalian expression atlas Fantom Consortium Nature 507 (7493), 462, 2014	1127	2014
The systems biology graphical notation N Le Novere, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ... Nature biotechnology 27 (8), 735-741, 2009	864	2009
Functional annotation of a full-length mouse cDNA collection J Kawai, A Shinagawa, K Shibata, M Yoshino, M Itoh, Y Ishii, T Arakawa, ... Nature 409 (6821), 685-689, 2001	817	2001
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage T Shiraki, S Kondo, S Katayama, K Waki, T Kasukawa, H Kawaji, ... Proceedings of the National Academy of Sciences 100 (26), 15776-15781, 2003	787	2003
An atlas of combinatorial transcriptional regulation in mouse and man T Ravasi, H Suzuki, CV Cannistraci, S Katayama, VB Bajic, K Tan, ... Cell 140 (5), 744-752, 2010	682	2010
An atlas of human long non-coding RNAs with accurate 5′ ends CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ... Nature 543 (7644), 199-204, 2017	554	2017
The BioMart community portal: an innovative alternative to large, centralized data repositories D Smedley, S Haider, S Durinck, L Pandini, P Provero, J Allen, O Arnaiz, ... Nucleic acids research 43 (W1), W589-W598, 2015	513	2015
Gateways to the FANTOM5 promoter level mammalian expression atlas M Lizio, J Harshbarger, H Shimoji, J Severin, T Kasukawa, S Sahin, ... Genome biology 16 (1), 1-14, 2015	454	2015
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells E Arner, CO Daub, K Vitting-Seerup, R Andersson, B Lilje, F Drabløs, ... Science 347 (6225), 1010-1014, 2015	412	2015
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line H Suzuki, ARR Forrest, E Van Nimwegen, CO Daub, PJ Balwierz, ... Nature genetics 41 (5), 553, 2009	348	2009
Hidden layers of human small RNAs H Kawaji, M Nakamura, Y Takahashi, A Sandelin, S Katayama, S Fukuda, ... BMC genomics 9 (1), 1-21, 2008	299	2008
A draft network of ligand–receptor-mediated multicellular signalling in human JA Ramilowski, T Goldberg, J Harshbarger, E Kloppmann, M Lizio, ... Nature communications 6 (1), 1-12, 2015	279	2015
Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation J Fraser, C Ferrai, AM Chiariello, M Schueler, T Rito, G Laudanno, ... Molecular systems biology 11 (12), 852, 2015	248	2015
Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages K Schroder, KM Irvine, MS Taylor, NJ Bokil, KA Le Cao, KA Masterman, ... Proceedings of the National Academy of Sciences 109 (16), E944-E953, 2012	239	2012
An integrated expression atlas of miRNAs and their promoters in human and mouse D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ... Nature biotechnology 35 (9), 872-878, 2017	222	2017
Effects of cytosine methylation on transcription factor binding sites YA Medvedeva, AM Khamis, IV Kulakovskiy, W Ba-Alawi, MSI Bhuyan, ... BMC genomics 15 (1), 1-12, 2014	194	2014

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