Fan Shi
Fan Shi
DEDJTR Victorian Government
Verified email at ecodev.vic.gov.au
Title
Cited by
Cited by
Year
GWIS-model-free, fast and exhaustive search for epistatic interactions in case-control GWAS
B Goudey, D Rawlinson, Q Wang, F Shi, H Ferra, RM Campbell, L Stern, ...
BMC genomics 14 (S3), S10, 2013
652013
Exome sequencing highlights the role of wild-relative introgression in shaping the adaptive landscape of the wheat genome
F He, R Pasam, F Shi, S Kant, G Keeble-Gagnere, P Kay, K Forrest, A Fritz, ...
Nature Genetics 51 (5), 896-904, 2019
302019
Mitigation of inbreeding while preserving genetic gain in genomic breeding programs for outbred plants
Z Lin, F Shi, BJ Hayes, HD Daetwyler
Theoretical and applied genetics 130 (5), 969-980, 2017
152017
Development and validation of a gene expression tumour classifier for cancer of unknown primary
RW Tothill, F Shi, L Paiman, J Bedo, A Kowalczyk, L Mileshkin, E Buela, ...
Pathology 47 (1), 7-12, 2015
152015
GWISFI: A universal GPU interface for exhaustive search of pairwise interactions in case-control GWAS in minutes
Q Wang, F Shi, A Kowalczyk, RM Campbell, B Goudey, D Rawlinson, ...
2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2014
122014
Interactions within the MHC contribute to the genetic architecture of celiac disease
B Goudey, G Abraham, E Kikianty, Q Wang, D Rawlinson, F Shi, I Haviv, ...
PloS one 12 (3), e0172826, 2017
102017
Exome sequence genotype imputation in globally diverse hexaploid wheat accessions
F Shi, J Tibbits, RK Pasam, P Kay, D Wong, J Petkowski, KL Forrest, ...
Theoretical and Applied Genetics 130 (7), 1393-1404, 2017
72017
Genomic prediction using prior quantitative trait loci information reveals a large reservoir of underutilised blackleg resistance in diverse canola (Brassica napus L.) lines
M Fikere, DM Barbulescu, MM Malmberg, F Shi, JCO Koh, AT Slater, ...
The plant genome 11 (2), 1-16, 2018
62018
Diversity and genome analysis of Australian and global oilseed Brassica napus L. germplasm using transcriptomics and whole genome re-sequencing
MM Malmberg, F Shi, GC Spangenberg, HD Daetwyler, NOI Cogan
Frontiers in plant science 9, 508, 2018
52018
Meta-analysis of gene expression microarrays with missing replicates
F Shi, G Abraham, C Leckie, I Haviv, A Kowalczyk
BMC bioinformatics 12 (1), 84, 2011
52011
A bi-ordering approach to linking gene expression with clinical annotations in gastric cancer
F Shi, C Leckie, G MacIntyre, I Haviv, A Boussioutas, A Kowalczyk
BMC bioinformatics 11 (1), 477, 2010
52010
Using Sensors and Unmanned Aircraft Systems for High-Throughput Phenotyping of Biomass in Perennial Ryegrass Breeding Trials.
J Wang, P Badenhorst, A Phelan, L Pembleton, F Shi, N Cogan, ...
Frontiers in plant science 10, 1381-1381, 2019
22019
Development of a histology-guided gene expression tumor classifier for cancer of unknown primary (CUP).
LR Mileshkin, K Byron, R Tothill, F Shi, L Paiman, J Bedo, A Kowalczyk, ...
Journal of Clinical Oncology 32 (15_suppl), 11108-11108, 2014
22014
Applications of Class-Conditional Conformal Predictor in Multi-Class Classification
F Shi, CS Ong, C Leckie
2013 12th International Conference on Machine Learning and Applications 1 …, 2013
22013
Precision Medicine: Dawn of Supercomputing in ‘omics Research
M Reumann, KE Holt, M Inouye, T Stinear, B Goudey, G Abraham, ...
eResearch Australasia, 2011
22011
Epistasis within the MHC contributes to the genetic architecture of celiac disease
B Goudey, G Abraham, E Kikianty, Q Wang, D Rawlinson, F Shi, I Haviv, ...
BioRxiv, 002485, 2015
12015
Genome-wide association reveals a complex architecture for rust resistance in 2300 worldwide bread wheat accessions screened under various Australian conditions
R Joukhadar, G Hollaway, F Shi, S Kant, K Forrest, D Wong, J Petkowski, ...
Theoretical and Applied Genetics, 1-18, 2020
2020
Development and Validation of a Phenotyping Computational Workflow to Predict the Biomass Yield of a Large Perennial Ryegrass Breeding Field Trial
A Gebremedhin, P Badenhorst, J Wang, F Shi, E Breen, K Giri, ...
Frontiers in plant science 11, 689, 2020
2020
Extension of a haplotype-based genomic prediction model to manage multi-environment wheat data using environmental covariates
S He, R Thistlethwaite, K Forrest, F Shi, MJ Hayden, R Trethowan, ...
Theoretical and Applied Genetics 132 (11), 3143-3154, 2019
2019
Exome sequencing highlights the role of wild-relative introgression in shaping the adaptive landscape of the wheat genome (vol 50, pg 896, 2019)
F He, R Pasam, F Shi, S Kant, G Keeble-Gagnere, P Kay, K Forrest, A Fritz, ...
NATURE GENETICS 51 (7), 1194-1194, 2019
2019
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