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Jeremiah J. Minich, PhD
Jeremiah J. Minich, PhD
Verified email at salk.edu - Homepage
Title
Cited by
Cited by
Year
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457-463, 2017
21712017
Contamination in low microbial biomass microbiome studies: issues and recommendations
R Eisenhofer, JJ Minich, C Marotz, A Cooper, R Knight, LS Weyrich
Trends in microbiology 27 (2), 105-117, 2019
7372019
Microbiome 101: studying, analyzing, and interpreting gut microbiome data for clinicians
C Allaband, D McDonald, Y Vázquez-Baeza, JJ Minich, A Tripathi, ...
Clinical gastroenterology and hepatology 17 (2), 218-230, 2019
2662019
Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces
A Checinska Sielaff, C Urbaniak, GBM Mohan, VG Stepanov, Q Tran, ...
Microbiome 7, 1-21, 2019
1842019
Quantifying and understanding well-to-well contamination in microbiome research
JJ Minich, JG Sanders, A Amir, G Humphrey, JA Gilbert, R Knight
MSystems 4 (4), 10.1128/msystems. 00186-19, 2019
126*2019
Visualizing’omic feature rankings and log-ratios using Qurro
MW Fedarko, C Martino, JT Morton, A González, G Rahman, CA Marotz, ...
NAR genomics and bioinformatics 2 (2), lqaa023, 2020
1192020
KatharoSeq enables high-throughput microbiome analysis from low-biomass samples
JJ Minich, Q Zhu, S Janssen, R Hendrickson, A Amir, R Vetter, J Hyde, ...
MSystems 3 (3), 10.1128/msystems. 00218-17, 2018
114*2018
Elevated temperature drives kelp microbiome dysbiosis, while elevated carbon dioxide induces water microbiome disruption
JJ Minich, MM Morris, M Brown, M Doane, MS Edwards, TP Michael, ...
PLoS One 13 (2), e0192772, 2018
1082018
Home chemical and microbial transitions across urbanization
LI McCall, C Callewaert, Q Zhu, SJ Song, A Bouslimani, JJ Minich, ...
Nature microbiology 5 (1), 108-115, 2020
942020
Microbial ecology of Atlantic salmon (Salmo salar) hatcheries: impacts of the built environment on fish mucosal microbiota
JJ Minich, GD Poore, K Jantawongsri, C Johnston, K Bowie, J Bowman, ...
Applied and environmental microbiology 86 (12), e00411-20, 2020
862020
Temporal, environmental, and biological drivers of the mucosal microbiome in a wild marine fish, Scomber japonicus
JJ Minich, S Petrus, JD Michael, TP Michael, R Knight, EE Allen
Msphere 5 (3), 10.1128/msphere. 00401-20, 2020
662020
Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity
JP Shaffer, LF Nothias, LR Thompson, JG Sanders, RA Salido, ...
Nature microbiology 7 (12), 2128-2150, 2022
56*2022
Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads
JG Sanders, S Nurk, RA Salido, J Minich, ZZ Xu, Q Zhu, C Martino, ...
Genome biology 20, 1-14, 2019
542019
From sample to multi-omics conclusions in under 48 hours
RA Quinn, JA Navas-Molina, ER Hyde, SJ Song, Y Vázquez-Baeza, ...
Msystems 1 (2), e00038-16, 2016
53*2016
High-throughput miniaturized 16S rRNA amplicon library preparation reduces costs while preserving microbiome integrity
JJ Minich, G Humphrey, RAS Benitez, J Sanders, A Swafford, EE Allen, ...
Msystems 3 (6), 10.1128/msystems. 00166-18, 2018
50*2018
Non-targeted tandem mass spectrometry enables the visualization of organic matter chemotype shifts in coastal seawater
D Petras, JJ Minich, LB Cancelada, RR Torres, E Kunselman, M Wang, ...
Chemosphere 271, 129450, 2021
48*2021
Improved multiple displacement amplification (iMDA) and ultraclean reagents
ST Motley, JM Picuri, CD Crowder, JJ Minich, SA Hofstadler, MW Eshoo
BMC genomics 15, 1-10, 2014
472014
Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces. Microbiome 7: 50
A Checinska Sielaff, C Urbaniak, GBM Mohan, VG Stepanov, Q Tran, ...
Bioinformatics 30, 2114-2120, 2019
462019
Atlantic Salmon (Salmo salar L., 1758) Gut Microbiota Profile Correlates with Flesh Pigmentation: Cause or Effect?
CDH Nguyen, G Amoroso, T Ventura, JJ Minich, A Elizur
Marine Biotechnology 22, 786-804, 2020
302020
A comparison of six DNA extraction protocols for 16S, ITS and shotgun metagenomic sequencing of microbial communities
JP Shaffer, CS Carpenter, C Martino, RA Salido, JJ Minich, MK Bryant, ...
Biotechniques 73 (1), 34-46, 2022
282022
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