Robert Ivanek
Robert Ivanek
Head of Bioinformatics at the Department of Biomedicine, University of Basel
Verified email at - Homepage
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DNA-binding factors shape the mouse methylome at distal regulatory regions
MB Stadler, R Murr, L Burger, R Ivanek, F Lienert, A Schöler, ...
Nature 480 (7378), 490-495, 2011
Deja vu in proteomics. A hit parade of repeatedly identified differentially expressed proteins
J Petrak, R Ivanek, O Toman, R Cmejla, J Cmejlova, D Vyoral, J Zivny, ...
Proteomics 8 (9), 1744-1749, 2008
Visualizing genomic data using Gviz and bioconductor
F Hahne, R Ivanek
Statistical genomics, 335-351, 2016
Methylation-dependent and-independent genomic targeting principles of the MBD protein family
T Baubec, R Ivánek, F Lienert, D Schübeler
Cell 153 (2), 480-492, 2013
Mutations in DNAJC5, encoding cysteine-string protein alpha, cause autosomal-dominant adult-onset neuronal ceroid lipofuscinosis
L Nosková, V Stránecký, H Hartmannová, A Přistoupilová, V Barešová, ...
The American Journal of Human Genetics 89 (2), 241-252, 2011
TMEM70 mutations cause isolated ATP synthase deficiency and neonatal mitochondrial encephalocardiomyopathy
A Čížková, V Stránecký, JA Mayr, M Tesařová, V Havlíčková, J Paul, ...
Nature genetics 40 (11), 1288-1290, 2008
Transcription factor occupancy can mediate active turnover of DNA methylation at regulatory regions
A Feldmann, R Ivanek, R Murr, D Gaidatzis, L Burger, D Schübeler
PLoS Genet 9 (12), e1003994, 2013
Dominant renin gene mutations associated with early-onset hyperuricemia, anemia, and chronic kidney failure
M Živná, H Hůlková, M Matignon, K Hodaňová, P Vylet'al, M Kalbáčová, ...
The American Journal of Human Genetics 85 (2), 204-213, 2009
Chromosomal rearrangement interferes with meiotic X chromosome inactivation
D Homolka, R Ivanek, J Capkova, P Jansa, J Forejt
Genome Research 17 (10), 1431-1437, 2007
Tead2 expression levels control the subcellular distribution of Yap and Taz, zyxin expression and epithelial–mesenchymal transition
M Diepenbruck, L Waldmeier, R Ivanek, P Berninger, P Arnold, ...
Journal of cell science 127 (7), 1523-1536, 2014
Mutations in TMEM76 cause mucopolysaccharidosis IIIC (Sanfilippo C syndrome)
M Hřebíček, L Mrázová, V Seyrantepe, S Durand, NM Roslin, L Nosková, ...
The American Journal of Human Genetics 79 (5), 807-819, 2006
Distinct progenitor lineages contribute to the heterogeneity of plasmacytoid dendritic cells
PF Rodrigues, L Alberti-Servera, A Eremin, GE Grajales-Reyes, R Ivanek, ...
Nature immunology 19 (7), 711-722, 2018
HIF and reactive oxygen species regulate oxidative phosphorylation in cancer
E Hervouet, A Cízková, J Demont, A Vojtísková, P Pecina, ...
Carcinogenesis 29 (8), 1528-1537, 2008
Attenuated sensing of SHH by Ptch1 underlies evolution of bovine limbs
J Lopez-Rios, A Duchesne, D Speziale, G Andrey, KA Peterson, ...
Nature 511 (7507), 46-51, 2014
Gain fat—lose metastasis: converting invasive breast cancer cells into adipocytes inhibits cancer metastasis
D Ishay-Ronen, M Diepenbruck, RKR Kalathur, N Sugiyama, S Tiede, ...
Cancer Cell 35 (1), 17-32. e6, 2019
Induction of hypoxia and necrosis in multicellular tumor spheroids is associated with resistance to chemotherapy treatment
S Däster, N Amatruda, D Calabrese, R Ivanek, E Turrini, RA Droeser, ...
Oncotarget 8 (1), 1725, 2017
A tumor suppressor function for notch signaling in forebrain tumor subtypes
C Giachino, JL Boulay, R Ivanek, A Alvarado, C Tostado, S Lugert, ...
Cancer cell 28 (6), 730-742, 2015
HAND2 targets define a network of transcriptional regulators that compartmentalize the early limb bud mesenchyme
M Osterwalder, D Speziale, M Shoukry, R Mohan, R Ivanek, M Kohler, ...
Developmental cell 31 (3), 345-357, 2014
Chromatin measurements reveal contributions of synthesis and decay to steady‐state mRNA levels
SC Tippmann, R Ivanek, D Gaidatzis, A Schöler, L Hoerner, ...
Molecular systems biology 8 (1), 593, 2012
Bioreactor-engineered cancer tissue-like structures mimic phenotypes, gene expression profiles and drug resistance patterns observed “in vivo”
C Hirt, A Papadimitropoulos, MG Muraro, V Mele, E Panopoulos, ...
Biomaterials 62, 138-146, 2015
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