Siobain Duffy
Siobain Duffy
Associate Professor, Dept Ecology, Evolution and Natural Resources, Rutgers University
Verified email at sebs.rutgers.edu - Homepage
TitleCited byYear
Rates of evolutionary change in viruses: patterns and determinants
S Duffy, LA Shackelton, EC Holmes
Nature Reviews Genetics 9 (4), 267-276, 2008
10582008
Single-cell genomics reveals organismal interactions in uncultivated marine protists
HS Yoon, DC Price, R Stepanauskas, VD Rajah, ME Sieracki, WH Wilson, ...
Science 332 (6030), 714-717, 2011
2542011
Phylogenetic evidence for rapid rates of molecular evolution in the single-stranded DNA begomovirus tomato yellow leaf curl virus
S Duffy, EC Holmes
Journal of virology 82 (2), 957-965, 2008
2392008
A field guide to eukaryotic circular single-stranded DNA viruses: insights gained from metagenomics
K Rosario, S Duffy, M Breitbart
Archives of virology 157 (10), 1851-1871, 2012
1872012
Insights into the evolutionary history of an emerging livestock pathogen: porcine circovirus 2
C Firth, MA Charleston, S Duffy, B Shapiro, EC Holmes
Journal of virology 83 (24), 12813-12821, 2009
1852009
Diverse circovirus-like genome architectures revealed by environmental metagenomics
K Rosario, S Duffy, M Breitbart
Journal of General Virology 90 (10), 2418-2424, 2009
1532009
Validation of high rates of nucleotide substitution in geminiviruses: phylogenetic evidence from East African cassava mosaic viruses
S Duffy, EC Holmes
The Journal of general virology 90 (Pt 6), 1539, 2009
1492009
Pleiotropic costs of niche expansion in the RNA bacteriophage Φ6
S Duffy, PE Turner, CL Burch
Genetics 172 (2), 751-757, 2006
1352006
Exploring the diversity of plant DNA viruses and their satellites using vector-enabled metagenomics on whiteflies
TFF Ng, S Duffy, JE Polston, E Bixby, GE Vallad, M Breitbart
PLoS One 6 (4), e19050, 2011
902011
Site-Specific, Enzymatic Biotinylation of Recombinant Proteins in< i> Spodoptera frugiperda</i> Cells Using Biotin Acceptor Peptides
S Duffy, KL Tsao, DS Waugh
Analytical biochemistry 262 (2), 122-128, 1998
901998
Modeling yeast spoilage in cold-filled ready-to-drink beverages with Saccharomyces cerevisiae, Zygosaccharomyces bailii, and Candida lipolytica
AS Battey, S Duffy, DW Schaffner
Applied and environmental microbiology 68 (4), 1901-1906, 2002
832002
Occurrence of Grapevine Leafroll-Associated Virus Complex in Napa Valley
AM Sharma, J Wang, S Duffy, S Zhang, MK Wong, A Rashed, ML Cooper, ...
PloS one 6 (10), e26227, 2011
742011
Evolution of host specificity drives reproductive isolation among RNA viruses
S Duffy, CL Burch, PE Turner
Evolution 61 (11), 2614-2622, 2007
692007
Synonymous site variation due to recombination explains higher genetic variability in begomovirus populations infecting non-cultivated hosts
ATM Lima, RR Sobrinho, J Gonzalez-Aguilera, CS Rocha, SJC Silva, ...
Journal of General Virology 94 (2), 418-431, 2013
682013
Advances in plant virus evolution: translating evolutionary insights into better disease management
R Acosta-Leal, S Duffy, Z Xiong, RW Hammond, SF Elena
Phytopathology 101 (10), 1136-1148, 2011
682011
Analysis and modeling of the variability associated with UV inactivation of Escherichia coli in apple cider
S Duffy, J Churey, RW Worobo, DW Schaffner
Journal of Food Protection® 63 (11), 1587-1590, 2000
672000
Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee
EM Adriaenssens, J Wittmann, JH Kuhn, D Turner, MB Sullivan, BE Dutilh, ...
Archives of virology 163 (4), 1125-1129, 2018
652018
Multiple introductions of the Old World begomovirus Tomato yellow leaf curl virus into the New World
S Duffy, EC Holmes
Applied and environmental microbiology 73 (21), 7114-7117, 2007
602007
Taxonomy of prokaryotic viruses: update from the ICTV bacterial and archaeal viruses subcommittee
M Krupovic, BE Dutilh, EM Adriaenssens, J Wittmann, FK Vogensen, ...
Archives of virology 161 (4), 1095-1099, 2016
592016
Experimental evidence indicating that mastreviruses probably did not co-diverge with their hosts
GW Harkins, W Delport, S Duffy, N Wood, AL Monjane, BE Owor, ...
Virology Journal 6 (1), 104, 2009
572009
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