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Yuedong Yang
Yuedong Yang
School of Computer Science and Engineering, Sun Yat-sen University
Verified email at mail.sysu.edu.cn - Homepage
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Cited by
Year
Deep learning enables accurate diagnosis of novel coronavirus (COVID-19) with CT images
Y Song, S Zheng, L Li, ..., Y Chong, J Shen*, Y Zha*, Y Yang*
IEEE/ACM transactions on computational biology and bioinformatics 18 (6 …, 2021
5412021
Improving prediction of secondary structure, local backbone angles, and solvent accessible surface area of proteins by iterative deep learning
R Heffernan, K Paliwal, J Lyons, ......, J Wang, A Sattar, Y Yang*, Y Zhou*
Scientific reports 5, 11476, 2015
3302015
Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and …
Y Yang, E Faraggi, H Zhao, Y Zhou
Bioinformatics 27 (15), 2076-2082, 2011
3272011
Capturing non-local interactions by long short-term memory bidirectional recurrent neural networks for improving prediction of protein secondary structure, backbone angles …
R Heffernan, Y Yang*, K Paliwal, Y Zhou*
Bioinformatics 33 (18), 2842-2849, 2017
2592017
SPINE X: improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles
E Faraggi, T Zhang, Y Yang, L Kurgan, Y Zhou
Journal of computational chemistry 33 (3), 259-267, 2012
2592012
Specific interactions for ab initio folding of protein terminal regions with secondary structures
Y Yang, Y Zhou
Proteins: Structure, Function, and Bioinformatics 72 (2), 793-803, 2008
2532008
Improving protein disorder prediction by deep bidirectional long short-term memory recurrent neural networks
J Hanson, Y Yang*, K Paliwal, Y Zhou*
Bioinformatics 33 (5), 685-692, 2017
2222017
Structural insights into the histone H1-nucleosome complex
BR Zhou, H Feng, H Kato, L Dai, Y Yang, Y Zhou, Y Bai
Proceedings of the National Academy of Sciences 110 (48), 19390-19395, 2013
2012013
Sixty-five years of the long march in protein secondary structure prediction: the final stretch?
Y Yang, J Gao, J Wang, R Heffernan, J Hanson, K Paliwal, Y Zhou
Briefings in bioinformatics 19 (3), 482-494, 2018
1972018
Ab initio folding of terminal segments with secondary structures reveals the fine difference between two closely related all‐atom statistical energy functions
Y Yang, Y Zhou
Protein science 17 (7), 1212-1219, 2008
1692008
Predicting backbone Cα angles and dihedrals from protein sequences by stacked sparse auto‐encoder deep neural network
J Lyons, A Dehzangi, ..., K Paliwal, A Sattar, Y Zhou, Y Yang*
Journal of computational chemistry 35 (28), 2040-2046, 2014
1492014
Community-wide assessment of protein-interface modeling suggests improvements to design methodology
SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ...
Journal of molecular biology 414 (2), 289-302, 2011
1432011
Predicting continuous local structure and the effect of its substitution for secondary structure in fragment-free protein structure prediction
E Faraggi#, Y Yang#, S Zhang, Y Zhou
Structure 17 (11), 1515-1527, 2009
1392009
Accurate prediction of protein contact maps by coupling residual two-dimensional bidirectional long short-term memory with convolutional neural networks
J Hanson, K Paliwal, T Litfin, Y Yang, Y Zhou
Bioinformatics 34 (23), 4039-4045, 2018
1382018
SPIDER2: A Package to Predict Secondary Structure, Accessible Surface Area, and Main-Chain Torsional Angles by Deep Neural Networks
Y Yang, R Heffernan, K Paliwal, J Lyons, A Dehzangi, A Sharma, J Wang, ...
Prediction of Protein Secondary Structure, 55-63, 2017
1342017
JAK2-binding long noncoding RNA promotes breast cancer brain metastasis
S Wang, K Liang, Q Hu, P Li, J Song, Y Yang, J Yao, LS Mangala, C Li, ...
The Journal of clinical investigation 127 (12), 4498-4515, 2017
1322017
Structure-based prediction of RNA-binding domains and RNA-binding sites and application to structural genomics targets
H Zhao#, Y Yang#, Y Zhou
Nucleic acids research 39 (8), 3017-3025, 2011
1212011
Improving prediction of protein secondary structure, backbone angles, solvent accessibility and contact numbers by using predicted contact maps and an ensemble of recurrent and …
J Hanson, K Paliwal, T Litfin, Y Yang, Y Zhou
Bioinformatics 35 (14), 2403-2410, 2019
1122019
Highly accurate sequence-based prediction of half-sphere exposures of amino acid residues in proteins
R Heffernan, A Dehzangi, J Lyons, ..., A Sattar, Y Zhou, Y Yang
Bioinformatics 32 (6), 843-849, 2016
932016
Predicting retrosynthetic reactions using self-corrected transformer neural networks
S Zheng, J Rao, Z Zhang, J Xu, Y Yang
Journal of Chemical Information and Modeling 60 (1), 47-55, 2020
922020
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