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Shanfeng Zhu
Shanfeng Zhu
Professor, Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University
Verified email at fudan.edu.cn - Homepage
Title
Cited by
Cited by
Year
Similarity-based machine learning methods for predicting drug–target interactions: a brief review
H Ding, I Takigawa, H Mamitsuka, S Zhu
Briefings in bioinformatics 15 (5), 734-747, 2014
4372014
Collaborative matrix factorization with multiple similarities for predicting drug-target interactions
X Zheng, H Ding, H Mamitsuka, S Zhu
Proceedings of the 19th ACM SIGKDD international conference on Knowledge …, 2013
3652013
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
3522019
Attentionxml: Label tree-based attention-aware deep model for high-performance extreme multi-label text classification
R You, Z Zhang, Z Wang, S Dai, H Mamitsuka, S Zhu
NeurIPS 2019, 5812-5822, 2019
2782019
Critical Assessment of Metagenome Interpretation: the second round of challenges
F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ...
Nature methods 19 (4), 429-440, 2022
1962022
GOLabeler: improving sequence-based large-scale protein function prediction by learning to rank
R You, Z Zhang, Y Xiong, F Sun, H Mamitsuka, S Zhu
Bioinformatics 34 (14), 2465-2473, 2018
1572018
Toward more accurate pan-specific MHC-peptide binding prediction: a review of current methods and tools
L Zhang, K Udaka, H Mamitsuka, S Zhu
Briefings in bioinformatics 13 (3), 350-364, 2012
1552012
DrugE-Rank: improving drug–target interaction prediction of new candidate drugs or targets by ensemble learning to rank
Q Yuan, J Gao, D Wu, S Zhang, H Mamitsuka, S Zhu
Bioinformatics 32 (12), i18-i27, 2016
1322016
DeepMeSH: deep semantic representation for improving large-scale MeSH indexing
S Peng, R You, H Wang, C Zhai, H Mamitsuka, S Zhu
Bioinformatics 32 (12), i70-i79, 2016
1312016
TEPITOPEpan: extending TEPITOPE for peptide binding prediction covering over 700 HLA-DR molecules
L Zhang, Y Chen, HS Wong, S Zhou, H Mamitsuka, S Zhu
PLoS One 7 (2), e30483, 2012
1302012
A probabilistic model for mining implicit ‘chemical compound–gene’relations from literature
S Zhu, Y Okuno, G Tsujimoto, H Mamitsuka
Bioinformatics 21 (suppl_2), ii245-ii251, 2005
1292005
Enhancing MEDLINE document clustering by incorporating MeSH semantic similarity
S Zhu, J Zeng, H Mamitsuka
Bioinformatics 25 (15), 1944-1951, 2009
1152009
NetGO: improving large-scale protein function prediction with massive network information
R You, S Yao, Y Xiong, X Huang, F Sun, H Mamitsuka, S Zhu
Nucleic acids research 47 (W1), W379-W387, 2019
1092019
Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease
GI Allen, N Amoroso, C Anghel, V Balagurusamy, CJ Bare, D Beaton, ...
Alzheimer's & Dementia 12 (6), 645-653, 2016
882016
Does summarization help stock prediction? A news impact analysis
X Li, H Xie, Y Song, S Zhu, Q Li, FL Wang
IEEE intelligent systems 30 (3), 26-34, 2015
822015
MeSHLabeler: improving the accuracy of large-scale MeSH indexing by integrating diverse evidence
K Liu, S Peng, J Wu, C Zhai, H Mamitsuka, S Zhu
Bioinformatics 31 (12), i339-i347, 2015
812015
Enhancing quantitative intra-day stock return prediction by integrating both market news and stock prices information
X Li, X Huang, X Deng, S Zhu
Neurocomputing 142, 228-238, 2014
802014
DeepText2Go: Improving large-scale protein function prediction with deep semantic text representation
R You, X Huang, S Zhu
Methods 145, 82-90, 2018
742018
DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction
R You, S Yao, H Mamitsuka, S Zhu
Bioinformatics 37 (Supplement_1), i262-i271, 2021
732021
Towards accurate human promoter recognition: a review of currently used sequence features and classification methods
J Zeng, S Zhu, H Yan
Briefings in bioinformatics 10 (5), 498-508, 2009
732009
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