| RESCRIPt: Reproducible sequence taxonomy reference database management MS Robeson, DR O’Rourke, BD Kaehler, M Ziemski, MR Dillon, JT Foster, ... PLoS computational biology 17 (11), e1009581, 2021 | 489 | 2021 |
| Bacterial itaconate degradation promotes pathogenicity J Sasikaran, M Ziemski, PK Zadora, A Fleig, IA Berg Nature chemical biology 10 (5), 371-377, 2014 | 209 | 2014 |
| Measuring the microbiome: Best practices for developing and benchmarking microbiomics methods NA Bokulich, M Ziemski, MS Robeson II, BD Kaehler Computational and Structural Biotechnology Journal 18, 4048-4062, 2020 | 54 | 2020 |
| Bacterial proteasome activator bpa (rv3780) is a novel ring-shaped interactor of the mycobacterial proteasome CL Delley, J Laederach, M Ziemski, M Bolten, D Boehringer, ... PloS one 9 (12), e114348, 2014 | 43 | 2014 |
| Genome‐wide interaction screen for Mycobacterium tuberculosis ClpCP protease reveals toxin–antitoxin systems as a major substrate class M Ziemski, J Leodolter, G Taylor, A Kerschenmeyer, E Weber‐Ban The FEBS journal 288 (1), 99-114, 2021 | 32 | 2021 |
| Beating naive Bayes at taxonomic classification of 16S rRNA gene sequences M Ziemski, T Wisanwanichthan, NA Bokulich, BD Kaehler Frontiers in Microbiology 12, 644487, 2021 | 22 | 2021 |
| Prokaryotic ubiquitin-like protein and its ligase/deligase enyzmes CL Delley, AU Müller, M Ziemski, E Weber-Ban Journal of molecular biology 429 (22), 3486-3499, 2017 | 20 | 2017 |
| bokulich-lab/RESCRIPt NA Bokulich, M Robeson, M Dillon, M Ziemski, B Kaehler, D O’Rourke Zenodo. doi 10, 2020 | 18 | 2020 |
| Cdc48-like protein of actinobacteria (Cpa) is a novel proteasome interactor in mycobacteria and related organisms M Ziemski, A Jomaa, D Mayer, S Rutz, C Giese, D Veprintsev, ... Elife 7, e34055, 2018 | 17 | 2018 |
| Pupylation-dependent and-independent proteasomal degradation in mycobacteria F Imkamp, M Ziemski, E Weber-Ban Biomolecular concepts 6 (4), 285-301, 2015 | 15 | 2015 |
| RESCRIPt: Reproducible sequence taxonomy reference database management for the masses MS Robeson, DR O'Rourke, BD Kaehler, M Ziemski, MR Dillon, JT Foster, ... bioRxiv, 2020 | 13* | 2020 |
| RESCRIPt: Reproducible sequence taxonomy reference database management for the masses. bioRxiv 2020.10. 05.326504 MS Robeson, DR O’Rourke, BD Kaehler, M Ziemski, MR Dillon, JT Foster, ... | 11 | 2020 |
| Reproducible acquisition, management and meta-analysis of nucleotide sequence (meta) data using q2-fondue M Ziemski, A Adamov, L Kim, L Flörl, NA Bokulich Bioinformatics 38 (22), 5081-5091, 2022 | 7 | 2022 |
| Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops MR Dillon, E Bolyen, A Adamov, A Belk, E Borsom, Z Burcham, ... PLOS Computational Biology 17 (6), e1009056, 2021 | 5 | 2021 |
| Reproducible sequence taxonomy reference database management for the masses MS Robeson, DR O’Rourke, BD Kaehler, M Ziemski, MR Dillon, JT Foster, ... Unknown Journal, 2020 | | 2020 |
| Discovery and characterization of novel Pup-proteasome system interaction partners in mycobacteria M Ziemski ETH Zurich, 2018 | | 2018 |
| Author response: Cdc48-like protein of actinobacteria (Cpa) is a novel proteasome interactor in mycobacteria and related organisms M Ziemski, A Jomaa, D Mayer, S Rutz, C Giese, D Veprintsev, ... | | |
| Diagnostyka molekularna–zastosowanie technik biologii molekularnej w identyfikacji chorób genetycznych i nowotworowych M SŁOTA, G STĘPIEŃ, M ZIEMSKI | | |
| The application of HIV-1 genomic sequence alignment in the virus subtype determination for further prognosis of possible disease progression pattern M SŁOTA, M ZIEMSKI | | |
Nicholas BokulichETH ZürichVerified email at ethz.ch
