Gene regulatory network reconstruction using Bayesian networks, the Dantzig Selector, the Lasso and their meta-analysis M Vignes, J Vandel, D Allouche, N Ramadan-Alban, C Cierco-Ayrolles, ... PloS one 6 (12), e29165, 2011 | 134 | 2011 |
Hepatic molecular signatures highlight the sexual dimorphism of Non‐Alcoholic SteatoHepatitis (NASH) J Vandel, J Dubois‐Chevalier, C Gheeraert, B Derudas, V Raverdy, ... Hepatology, 2020 | 49 | 2020 |
Probing transcription factor combinatorics in different promoter classes and in enhancers J Vandel, O Cassan, S Lèbre, CH Lecellier, L Bréhélin BMC genomics 20, 1-19, 2019 | 34 | 2019 |
Probing instructions for expression regulation in gene nucleotide compositions C Bessière, M Taha, F Petitprez, J Vandel, JM Marin, L Bréhélin, S Lèbre, ... PLoS computational biology 14 (1), e1005921, 2018 | 20 | 2018 |
Functional genomics uncovers the transcription factor BNC2 as required for myofibroblastic activation in fibrosis M Bobowski-Gerard, C Boulet, FP Zummo, J Dubois-Chevalier, ... Nature Communications 13 (1), 5324, 2022 | 13 | 2022 |
GIANT: galaxy-based tool for interactive analysis of transcriptomic data J Vandel, C Gheeraert, B Staels, J Eeckhoute, P Lefebvre, ... Scientific Reports 10 (1), 1-13, 2020 | 13 | 2020 |
A panel of learning methods for the reconstruction of gene regulatory networks in a systems genetics context D Allouche, C Cierco-Ayrolles, S Givry, G Guillermin, B Mangin, T Schiex, ... Gene Network Inference: Verification of Methods for Systems Genetics Data, 9-31, 2014 | 12 | 2014 |
New local move operators for Bayesian network structure learning J Vandel, B Mangin, S De Givry Proceedings of PGM-12, Granada, Spain, 2012 | 7 | 2012 |
SAGA: Sparse And Geometry-Aware non-negative matrix factorization through non-linear local embedding N Courty, X Gong, J Vandel, T Burger Machine learning 97, 205-226, 2014 | 6 | 2014 |
Extended Bayesian scores for reconstructing gene regulatory networks J Vandel, B Mangin, M Vignes, S de Givry ECCS-10 workshop on graphical models for reasoning on biological systems …, 2010 | 5 | 2010 |
Apprentissage de la structure de réseaux bayésiens. Application aux données de génétique-génomique. J Vandel Paul Sabatier University, Toulouse, France, 2012 | 4 | 2012 |
Combining diabetes, sex, and menopause as meaningful clinical features associated with NASH and liver fibrosis in individuals with class II and III obesity: A retrospective … V Raverdy, E Chatelain, G Lasailly, R Caiazzo, J Vandel, H Verkindt, ... Obesity 31 (12), 3066-3076, 2023 | 2 | 2023 |
Reconstruction quality of a biological network when its constituting elements are partially observed V Picheny, J Vandel, M Vignes, N Villa-Vialaneix Seventeenth International Conference on Artificial Intelligence and …, 2014 | 2 | 2014 |
Modeling transcription factor combinatorics in promoters and enhancers J Vandel, O Cassan, S Lèbre, CH Lecellier, L Brehelin | 1 | 2018 |
Inférence de réseaux de régulation de gènes au travers de scores étendus dans les réseaux Bayésiens. J Vandel, B Mangin, M Vignes, D Leroux, O Loudet, ML Martin-Magniette, ... Rev. d'Intelligence Artif. 26 (6), 679-708, 2012 | 1 | 2012 |
A New Local Move Operator for Reconstructing Gene Regulatory Networks J Vandel, S de Givry Alessandro Dal Palu, Agostino Dovier, Andrea Formisano, 67, 2011 | 1 | 2011 |
Reconstruction de réseau de régulation de gène à l’aide de données génomiques et de données génétiques J Vandel, S de Givry, B Mangin, M Vignes Conférence d'Apprentissage Automatique (CAP 2010), 12 p., 2010 | 1 | 2010 |
Inférence de réseaux de régulation de genesa partir de données d’expression et de polymorphisme J Vandel, S de Givry JOBIM-09 workshop sur Modeles graphiques probabilistes pour l’intégration de …, 2009 | 1 | 2009 |
Time-of-day-dependent variation of the human liver transcriptome and metabolome is disrupted in MASLD M Johanns, JT Haas, V Raverdy, J Vandel, J Chevalier-Dubois, L Guille, ... JHEP Reports 6 (1), 100948, 2024 | | 2024 |
Time-of-day-dependent variation of the hepatic transcriptome and metabolome is disrupted in non-alcoholic fatty liver disease patients M Johanns, JT Haas, V Raverdy, J Vandel, J Chevalier-Dubois, L Guille, ... bioRxiv, 2023.04. 05.535334, 2023 | | 2023 |