| BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons NF Alikhan, NK Petty, NLB Zakour, SA Beatson BMC genomics 12 (1), 1-10, 2011 | 1529 | 2011 |
| A genomic overview of the population structure of Salmonella NF Alikhan, Z Zhou, MJ Sergeant, M Achtman PLoS genetics 14 (4), e1007261, 2018 | 253 | 2018 |
| GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens Z Zhou, NF Alikhan, MJ Sergeant, N Luhmann, C Vaz, AP Francisco, ... Genome research 28 (9), 1395-1404, 2018 | 168 | 2018 |
| The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity Z Zhou, NF Alikhan, K Mohamed, Y Fan, M Achtman, D Brown, ... Genome research 30 (1), 138-152, 2020 | 93* | 2020 |
| Comparative analysis of core genome MLST and SNP typing within a European Salmonella serovar Enteritidis outbreak ME Pearce, NF Alikhan, TJ Dallman, Z Zhou, K Grant, MCJ Maiden International journal of food microbiology 274, 1-11, 2018 | 59 | 2018 |
| Evaluating the effects of SARS-CoV-2 Spike mutation D614G on transmissibility and pathogenicity E Volz, V Hill, JT McCrone, A Price, D Jorgensen, Á O’Toole, J Southgate, ... Cell, 2020 | 56 | 2020 |
| Pan-genome analysis of ancient and modern Salmonella enterica demonstrates genomic stability of the invasive para C lineage for millennia Z Zhou, I Lundstrøm, A Tran-Dien, S Duchêne, NF Alikhan, MJ Sergeant, ... Current Biology 28 (15), 2420-2428. e10, 2018 | 56* | 2018 |
| Genome sequence of the emerging pathogen Aeromonas caviae SA Beatson, MG de Luna, NL Bachmann, NF Alikhan, KR Hanks, ... Journal of bacteriology 193 (5), 1286-1287, 2011 | 33 | 2011 |
| Mechanisms involved in acquisition of blaNDM genes by IncA/C2 and IncFIIY plasmids AM Wailan, HE Sidjabat, WK Yam, NF Alikhan, NK Petty, AL Sartor, ... Antimicrobial agents and chemotherapy 60 (7), 4082-4088, 2016 | 31 | 2016 |
| Comparison of classical multi-locus sequence typing software for next-generation sequencing data AJ Page, NF Alikhan, HA Carleton, T Seemann, JA Keane, LS Katz Microbial genomics 3 (8), 2017 | 29 | 2017 |
| Molecular analysis of asymptomatic bacteriuria Escherichia coli strain VR50 reveals adaptation to the urinary tract by gene acquisition SA Beatson, NLB Zakour, M Totsika, BM Forde, RE Watts, AN Mabbett, ... Infection and immunity 83 (5), 1749-1764, 2015 | 20 | 2015 |
| Emergence of human-adapted Salmonella enterica is linked to the Neolithization process FM Key, C Posth, LR Esquivel-Gomez, R Hübler, MA Spyrou, ... Nature ecology & evolution 4 (3), 324-333, 2020 | 14 | 2020 |
| Genome-wide identification and characterization of a superfamily of bacterial extracellular contractile injection systems L Chen, N Song, B Liu, N Zhang, NF Alikhan, Z Zhou, Y Zhou, S Zhou, ... Cell reports 29 (2), 511-521. e2, 2019 | 13 | 2019 |
| Accurate reconstruction of microbial strains from metagenomic sequencing using representative reference genomes Z Zhou, N Luhmann, NF Alikhan, C Quince, M Achtman International Conference on Research in Computational Molecular Biology, 225-240, 2018 | 12 | 2018 |
| ICTV virus taxonomy profile: Herelleviridae J Barylski, AM Kropinski, NF Alikhan, EM Adriaenssens, IR Consortium The Journal of general virology 101 (4), 362, 2020 | 8 | 2020 |
| Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation M Bawn, NF Alikhan, G Thilliez, M Kirkwood, NE Wheeler, L Petrovska, ... PLoS genetics 16 (6), e1008850, 2020 | 6 | 2020 |
| CoronaHiT: large scale multiplexing of SARS-CoV-2 genomes using Nanopore sequencing DJ Baker, GL Kay, A Aydin, T Le-Viet, S Rudder, AP Tedim, A Kolyva, ... biorxiv, 2020 | 5 | 2020 |
| Genomic diversity of Escherichia coli isolates from non-human primates in the Gambia E Foster-Nyarko, NF Alikhan, A Ravi, G Thilliez, NM Thomson, D Baker, ... Microbial genomics 6 (9), 2020 | 2 | 2020 |
| Emergence of resistance to fluoroquinolones and third-generation cephalosporins in Salmonella Typhi in Lahore, Pakistan F Rasheed, M Saeed, NF Alikhan, D Baker, M Khurshid, EV Ainsworth, ... Microorganisms 8 (9), 1336, 2020 | 2 | 2020 |
| The PHA4GE SARS-CoV-2 contextual data specification for open genomic epidemiology EJ Griffiths, RE Timme, AJ Page, NF Alikhan, D Fornika, F Maguire, ... Preprints, 2020 | 2 | 2020 |
Zhemin ZhouWarwick Medical School, University of WarwickVerified email at warwick.ac.uk
